RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 BBS5Q8N3I7 341 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 MFSD2AQ8NA29 543 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 LPCAT1Q8NF37 534 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 OR2T11Q8NH01 316 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 EEF1AKMT1Q8WVE0 214 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 PSKH2Q96QS6 385 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 ADI1Q9BV57 179 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 TRIM54Q9BYV2 358 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 BPIFA1Q9NP55 256 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 AIG1Q9NVV5 245 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 HSFX1Q9UBD0 423 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 UBA2Q9UBT2 640 aaPredicted RBP11.71□□□□□ -0.53
CD44-209ENST00000433892 PCTPQ9UKL6 214 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 SLC8A2Q9UPR5 921 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 USP22Q9UPT9 525 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 PCDHGC4Q9Y5F7 938 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 OAS3Q9Y6K5 1087 aaKnown RBP11.71□□□□□ -0.53
CD44-209ENST00000433892 VWA8A3KMH1 1905 aa11.71□□□□□ -0.53
CD44-209ENST00000433892 CROCCQ5TZA2 2017 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 KLHL33A6NCF5 533 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 CCDC154A6NI56 674 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 C2orf81A6NN90 581 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 INSIG1O15503 277 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 SLC22A3O75751 556 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 VNN2O95498 520 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 CLIC3O95833 236 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 TSPAN12O95859 305 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 PRLP01236 227 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 MT-ND1P03886 318 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 PRR35P0CG20 571 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 ZFP36L2P47974 494 aaKnown RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 CCT8P50990 548 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 HK3P52790 923 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 MERTKQ12866 999 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 TAF1AQ15573 450 aaPredicted RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 TIGD2Q4W5G0 525 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 COQ5Q5HYK3 327 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 HABP4Q5JVS0 413 aaKnown RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 TTC33Q6PID6 262 aaPredicted RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 PACRGLQ8N7B6 248 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 TRPV3Q8NET8 790 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 B4GALNT2Q8NHY0 566 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 HM13Q8TCT9 377 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 EZH1Q92800 747 aaPredicted RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 CENPNQ96H22 339 aaPredicted RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 CDK15Q96Q40 435 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 KCTD14Q9BQ13 255 aaPredicted RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 MAGEH1Q9H213 219 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 SARS2Q9NP81 518 aaKnown RBP11.71□□□□□ -0.54
CD44-209ENST00000433892 FKBPLQ9UIM3 349 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 V9GYQ6 96 aa11.71□□□□□ -0.54
CD44-209ENST00000433892 MOXD2PA6NHM9 499 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 SNX2O60749 519 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 CHEK2O96017 543 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 PYGLP06737 847 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 UROSP10746 265 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 CDK4P11802 303 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 MC4RP32245 332 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 OXCT1P55809 520 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 FOXM1Q08050 763 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 MRPL58Q14197 206 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 LRRC23Q53EV4 343 aaPredicted RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 XKR7Q5GH72 579 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 KIAA2013Q8IYS2 634 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 NKAPQ8N5F7 415 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 EFHBQ8N7U6 833 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 CDYL2Q8N8U2 506 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 CYGBQ8WWM9 190 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 LINGO1Q96FE5 620 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 PHF12Q96QT6 1004 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 C9orf16Q9BUW7 83 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 MUC3BQ9H195 1237 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 SCUBE2Q9NQ36 999 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 INTS7Q9NVH2 962 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 CD274Q9NZQ7 290 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 HCSTQ9UBK5 93 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 EIF2B4Q9UI10 523 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 TRMT6Q9UJA5 497 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 TSR3Q9UJK0 312 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 HEMK1Q9Y5R4 338 aaPredicted RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 OR6C75A6NL08 312 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 IQCF5A8MTL0 148 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 CBX4O00257 560 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 STX16O14662 325 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 EI24O14681 340 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 GIPC1O14908 333 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 ACOX3O15254 700 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 GPR39O43194 453 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 ACSL4O60488 711 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 VPS26AO75436 327 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 OR4F21O95013 312 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 MLYCDO95822 493 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 GPIP06744 558 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 PKMP14618 531 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 IL12AP29459 219 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 ARL1P40616 181 aaPredicted RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 CDK9P50750 372 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 POLR2JP52435 117 aaKnown RBP11.7□□□□□ -0.54
CD44-209ENST00000433892 TUBA4AP68366 448 aa11.7□□□□□ -0.54
CD44-209ENST00000433892 NKX3-2P78367 333 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms