RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SLC14A1Q13336 389 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 AASDHQ4L235 1098 aaPredicted RBP12.3□□□□□ -0.44
USP40-205ENST00000430158 SNX20Q7Z614 316 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PIP4P1Q86T03 277 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PHACTR4Q8IZ21 702 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 OXR1Q8N573 874 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PNPLA1Q8N8W4 532 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 DDHD1Q8NEL9 900 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 PPHLN1Q8NEY8 458 aaKnown RBP12.3□□□□□ -0.44
USP40-205ENST00000430158 ART4Q93070 314 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 HDAC10Q969S8 669 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 MFSD3Q96ES6 412 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 CLPBQ9H078 707 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 DPH5Q9H2P9 285 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 TRIM39Q9HCM9 518 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 ARFGAP3Q9NP61 516 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 TM7SF3Q9NS93 570 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 VPS18Q9P253 973 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 ATXN10Q9UBB4 475 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 ANAPC5Q9UJX4 755 aa12.3□□□□□ -0.44
USP40-205ENST00000430158 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 MAGEB16A2A368 324 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 YKT6O15498 198 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 NUAK1O60285 661 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 CBFA2T3O75081 653 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 BANF1O75531 89 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 GOT2P00505 430 aaKnown RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 CELA2BP08218 269 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 ZNF8P17098 575 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 JUNDP17535 347 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 KELP23276 732 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 MC4RP32245 332 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ARRB1P49407 418 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 CCT8P50990 548 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ARHGAP8P85298 464 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 PPARDQ03181 441 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 DHX9Q08211 1270 aaKnown RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 ITGA9Q13797 1035 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 SEMA3AQ14563 771 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 GPR33Q49SQ1 333 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ANKRD20A4Q4UJ75 823 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 PYCR3Q53H96 274 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 GPRC6AQ5T6X5 926 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 PSAPL1Q6NUJ1 521 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 CES3Q6UWW8 571 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 NRROSQ86YC3 692 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ZNF547Q8IVP9 402 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 NXPE1Q8N323 547 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 CEP112Q8N8E3 955 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ZNF548Q8NEK5 533 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 EBNA1BP2Q99848 306 aaKnown RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 LRRC61Q9BV99 259 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 FAM96AQ9H5X1 160 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ASB8Q9H765 288 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 ZDHHC18Q9NUE0 388 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 DNAJC28Q9NX36 388 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 MARCH4Q9P2E8 410 aaPredicted RBP12.29□□□□□ -0.44
USP40-205ENST00000430158 KLQ9UEF7 1012 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 SUFUQ9UMX1 484 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 BTBD3Q9Y2F9 522 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 TEX264Q9Y6I9 313 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 UNC13CQ8NB66 2214 aa12.29□□□□□ -0.44
USP40-205ENST00000430158 COL5A1P20908 1838 aaPredicted RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 SLC30A4O14863 429 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 MTX2O75431 263 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 SLC25A14O95258 325 aaPredicted RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 RASGRP1O95267 797 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 HNRNPKP61978 463 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP40-205ENST00000430158 FOXK1P85037 733 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 IL9RQ01113 521 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 CACNG1Q06432 222 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 GLE1Q53GS7 698 aaKnown RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 KIAA0930Q6ICG6 404 aaPredicted RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 C8orf74Q6P047 294 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 XKR5Q6UX68 686 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 C11orf96Q7Z7L8 435 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 GATAD2AQ86YP4 633 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 PHYKPLQ8IUZ5 450 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 HID1Q8IV36 788 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 RASGEF1AQ8N9B8 481 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 BBOF1Q8ND07 529 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 CCL4L1Q8NHW4 92 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 BAHD1Q8TBE0 780 aaPredicted RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 FBXO25Q8TCJ0 367 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 NETO1Q8TDF5 533 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 GPBAR1Q8TDU6 330 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 RAB17Q9H0T7 212 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 TMEM168Q9H0V1 697 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 OR2AG1Q9H205 316 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 CYP4F12Q9HCS2 524 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 TRNAU1APQ9NX07 287 aaKnown RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 UTP11Q9Y3A2 253 aaKnown RBP12.28□□□□□ -0.44
USP40-205ENST00000430158 PLEKHM1Q9Y4G2 1056 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 CSNK1G3Q9Y6M4 447 aa12.28□□□□□ -0.44
USP40-205ENST00000430158 ESYT3A0FGR9 886 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 GPR89AB7ZAQ6 455 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 LMO7DNF2Z398 122 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 TRIM38O00635 465 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 SCAMP1O15126 338 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 VEGFDO43915 354 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms