RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TYRP1P17643 537 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 CCR10P46092 362 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 EPHA4P54764 986 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 MC2RQ01718 297 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 FOXM1Q08050 763 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 PPIDQ08752 370 aaKnown RBP14.33□□□□□ -0.12
SDC1-204ENST00000429035 CDC20Q12834 499 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 C16orf46Q6P387 395 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 WDR74Q6RFH5 385 aaPredicted RBP14.33□□□□□ -0.12
SDC1-204ENST00000429035 NPNTQ6UXI9 565 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 PLD5Q8N7P1 536 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 TGM7Q96PF1 710 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 RGSL1A5PLK6 1076 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 A6NCN8 305 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 LILRA5A6NI73 299 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 OR5K4A6NMS3 321 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 POLR1CO15160 346 aaPredicted RBP14.32□□□□□ -0.12
SDC1-204ENST00000429035 NKX2-8O15522 239 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 SUV39H1O43463 412 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 RASSF9O75901 435 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 TPM3P06753 285 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 AMD1P17707 334 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 SEPHS1P49903 392 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 IFI35P80217 286 aaPredicted RBP14.32□□□□□ -0.12
SDC1-204ENST00000429035 TLE1Q04724 770 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 SLC18A3Q16572 532 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 ARHGAP22Q7Z5H3 698 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 NT5DC3Q86UY8 548 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 LRRTM4Q86VH4 590 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 PLXDC1Q8IUK5 500 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 RAVER1Q8IY67 606 aaKnown RBP14.32□□□□□ -0.12
SDC1-204ENST00000429035 CNTD1Q8N815 330 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 AVL9Q8NBF6 648 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 GPR26Q8NDV2 337 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 GDAP1Q8TB36 358 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 STARD8Q92502 1023 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 GLYATL1Q969I3 302 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 CATSPER2Q96P56 530 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 PLEKHG4BQ96PX9 1271 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 ANP32EQ9BTT0 268 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 ZSCAN5AQ9BUG6 496 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 ADNPQ9H2P0 1102 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 TRIM10Q9UDY6 481 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 LCMT1Q9UIC8 334 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 PILRAQ9UKJ1 303 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 NENFQ9UMX5 172 aa14.32□□□□□ -0.12
SDC1-204ENST00000429035 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.32□□□□□ -0.12
SDC1-204ENST00000429035 F5H423 210 aaPredicted RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 AKR1B10O60218 316 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 PMPCBO75439 489 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 MAP4P27816 1152 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 DCDC1P59894 354 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 UBE2IP63279 158 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 GTF2H3Q13889 308 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 PDK1Q15118 436 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 SKIDA1Q1XH10 827 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 DEFB109BQ30KR1 87 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ATP1A1-AS1Q5TC04 95 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 CCDC70Q6NSX1 233 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 TIPARPQ7Z3E1 657 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 ADGRG6Q86SQ4 1221 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 TRAPPC5Q8IUR0 188 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 TRAM1L1Q8N609 369 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 SPATA22Q8NHS9 363 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 COL26A1Q96A83 441 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 RNF25Q96BH1 459 aaPredicted RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 EID2BQ96D98 161 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ELMO2Q96JJ3 720 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 SLC45A3Q96JT2 553 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ZPBPQ9BS86 351 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 EFHD1Q9BUP0 239 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ULBP3Q9BZM4 244 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 XPO4Q9C0E2 1151 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 EPB41L1Q9H4G0 881 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 TRIM39Q9HCM9 518 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 BPIFA1Q9NP55 256 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ZNF71Q9NQZ8 489 aaPredicted RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 RAD18Q9NS91 495 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 ZNHIT6Q9NWK9 470 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 UBP1Q9NZI7 540 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 SCHIP1Q9P0W5 487 aaPredicted RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 PDP2Q9P2J9 529 aa14.31□□□□□ -0.12
SDC1-204ENST00000429035 MRPS18BQ9Y676 258 aaKnown RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 MN1Q10571 1320 aaPredicted RBP14.31□□□□□ -0.12
SDC1-204ENST00000429035 KMOO15229 486 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 CAPN5O15484 640 aaPredicted RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 UBXN7O94888 489 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 MT-CYBP00156 380 aaPredicted RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 TMEM253P0C7T8 217 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 RPL10P27635 214 aaKnown RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 OAS2P29728 719 aaKnown RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 CDK18Q07002 472 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 TMEM26Q6ZUK4 368 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 RASGRP3Q8IV61 690 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 C9orf43Q8TAL5 461 aaPredicted RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 CXorf40BQ96DE9 158 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 IMP4Q96G21 291 aaKnown RBP14.3□□□□□ -0.12
SDC1-204ENST00000429035 TRIB3Q96RU7 358 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 SPTLC3Q9NUV7 552 aa14.3□□□□□ -0.12
SDC1-204ENST00000429035 SLC23A2Q9UGH3 650 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms