RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 WDR4P57081 412 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 RACK1P63244 317 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 DUSP4Q13115 394 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 TCEAL1Q15170 157 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ESCO2Q56NI9 601 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 FGD3Q5JSP0 725 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 RETSATQ6NUM9 610 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 PID1Q7Z2X4 250 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 C12orf29Q8N999 325 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 KREMEN2Q8NCW0 462 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 INTS12Q96CB8 462 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 CDCA3Q99618 268 aaPredicted RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 ADAM33Q9BZ11 813 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 WHRNQ9P202 907 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 SLC25A13Q9UJS0 675 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 TRAV20A0A0B4J274 112 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 PTGESO14684 152 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 SLC22A1O15245 554 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 PRPF4O43172 522 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP54-205ENST00000424265 SEC24AO95486 1093 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ATP5BP06576 529 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 OR2B6P58173 313 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 WDR5P61964 334 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 CSNK2BP67870 215 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 IL31Q6EBC2 164 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 PROX1Q92786 737 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 SNX18Q96RF0 628 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 GON7Q9BXV9 100 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 DYRK4Q9NR20 520 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 TRHDEQ9UKU6 1024 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 EIF3LQ9Y262 564 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 TM9SF1O15321 606 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 HOXB1P14653 301 aaPredicted RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 PFKLP17858 780 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ALOX12P18054 663 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 NDST2P52849 883 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 GEMP55040 296 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 IFITM2Q01629 132 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ZBTB6Q15916 424 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 C1orf220Q5T0J3 134 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 HJURPQ8NCD3 748 aaPredicted RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 ZNF461Q8TAF7 563 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 RAB2BQ8WUD1 216 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ST8SIA2Q92186 375 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 PCDHB18PQ96TA0 734 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 TXLNGYQ9BZA5 131 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 EFCAB1Q9HAE3 211 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 DNAJC11Q9NVH1 559 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 CDH22Q9UJ99 828 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 BAIAP2Q9UQB8 552 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 AAR2Q9Y312 384 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 PCDHGB3Q9Y5G1 929 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 FAM237BA0A1B0GVD1 139 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 H3BNH8 94 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 KCNN4O15554 427 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 SLC4A1P02730 911 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 RHOCP08134 193 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 HNRNPA1P09651 372 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP54-205ENST00000424265 HDCP19113 662 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 AQP5P55064 265 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 DAOAP59103 153 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 MMRN1Q13201 1228 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 RNASEH2BQ5TBB1 312 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 NAPEPLDQ6IQ20 393 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ANGPTL8Q6UXH0 198 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ALKAL1Q6UXT8 129 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 RASGEF1CQ8N431 466 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 NIPA2Q8N8Q9 360 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ART4Q93070 314 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ACSF2Q96CM8 615 aaPredicted RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 PITHD1Q9GZP4 211 aaPredicted RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 RNF19AQ9NV58 838 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 CBY1Q9Y3M2 126 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 ZNF175Q9Y473 711 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 A0A0G2JMZ2 1700 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 SYNCRIPO60506 623 aaKnown RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 CYP2F1P24903 491 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 ADRA1DP25100 572 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 COILP38432 576 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 ITGA8P53708 1063 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 EDEM1Q92611 657 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 E2F7Q96AV8 911 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 B3GNT5Q9BYG0 378 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 HAPLN2Q9GZV7 340 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 FAM96AQ9H5X1 160 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 NINJ2Q9NZG7 142 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TLR5O60602 858 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 NBNO60934 754 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 RSL1D1O76021 490 aaKnown RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 UGT2B4P06133 528 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 ARSEP51690 589 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 GPS1Q13098 491 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 POLD3Q15054 466 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 LRRC26Q2I0M4 334 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 ATAT1Q5SQI0 421 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 ZBTB49Q6ZSB9 765 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 ARCQ7LC44 396 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 EGLN2Q96KS0 407 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 BTN2A3PQ96KV6 586 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TTYH2Q9BSA4 534 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms