RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MAGEL2Q9UJ55 1249 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ZSWIM8A7E2V4 1837 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SNPHO15079 494 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SIX3O95343 332 aaPredicted RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 C22orf31O95567 290 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 LINC00032P0C843 101 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PRR35P0CG20 571 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 FSHRP23945 695 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 CD6P30203 668 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ARPC4P59998 168 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ANKRD34AQ69YU3 496 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SULT1C3Q6IMI6 304 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 RAVER1Q8IY67 606 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 LGI2Q8N0V4 545 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ELMOD1Q8N336 334 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ZNF555Q8NEP9 628 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PSMA8Q8TAA3 256 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SH3RF2Q8TEC5 729 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 FCRL5Q96RD9 977 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TRIT1Q9H3H1 467 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 NOL6Q9H6R4 1146 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 SPC25Q9HBM1 224 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 USE1Q9NZ43 259 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 USP21Q9UK80 565 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 INTS6Q9UL03 887 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 BTRCQ9Y297 605 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SOWAHBA6NEL2 793 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 LRRC14BA6NHZ5 514 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 ASNA1O43681 348 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 DYRK3O43781 588 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 NOBOXO60393 691 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 SEC24AO95486 1093 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 KRT75O95678 551 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 S100BP04271 92 aaPredicted RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 CCDC159P0C7I6 412 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CHRNA4P43681 627 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CDKN2DP55273 166 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 NCS1P62166 190 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 ZNF691Q5VV52 312 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CATSPERGQ6ZRH7 1159 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 PRSS48Q7RTY5 328 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 P2RY8Q86VZ1 359 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 HS3ST5Q8IZT8 346 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 LRRC52Q8N7C0 313 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 GABPB2Q8TAK5 448 aaPredicted RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 FBLIM1Q8WUP2 373 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 ZNF566Q969W8 418 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CELF6Q96J87 481 aaKnown RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 NSUN5Q96P11 429 aaKnown RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 CCDC90BQ9GZT6 254 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CARS2Q9HA77 564 aaKnown RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 NEK6Q9HC98 313 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 AIG1Q9NVV5 245 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 LEF1Q9UJU2 399 aaPredicted RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 FBXW11Q9UKB1 542 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 DOCK1Q14185 1865 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 A0A1B0GTL3 188 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CCDC154A6NI56 674 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 M0QX08 132 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 GUCY1B2O75343 617 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 BEST1O76090 585 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CYBBP04839 570 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 SLC26A3P40879 764 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CASP3P42574 277 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 FPGSQ05932 587 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 GRIK2Q13002 908 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 FAM98BQ52LJ0 330 aaKnown RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 PTGR2Q8N8N7 351 aaPredicted RBP10.62□□□□□ -0.71
USP54-204ENST00000422491 BEST2Q8NFU1 509 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 ITFG1Q8TB96 612 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 CHAC2Q8WUX2 184 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 TSPAN18Q96SJ8 248 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 TIMM22Q9Y584 194 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 SNX10Q9Y5X0 201 aa10.62□□□□□ -0.71
USP54-204ENST00000422491 LOC100130705A0A1B0GUX0 176 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 TSPAN1O60635 241 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ANXA9O76027 345 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CNTN5O94779 1100 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 GSNP06396 782 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 UFM1P61960 85 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ZBTB6Q15916 424 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ARHGAP36Q6ZRI8 547 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 PIM3Q86V86 326 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 RALGPS2Q86X27 583 aaPredicted RBP10.61□□□□□ -0.71
USP54-204ENST00000422491 LRRC49Q8IUZ0 686 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 FAM86B1Q8N7N1 296 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CHST13Q8NET6 341 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CALML6Q8TD86 181 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 RORBQ92753 470 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 C18orf25Q96B23 403 aaPredicted RBP10.61□□□□□ -0.71
USP54-204ENST00000422491 DACH2Q96NX9 599 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ABCB10Q9NRK6 738 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 OSGIN1Q9UJX0 560 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 GJD2Q9UKL4 321 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 UGT2A1Q9Y4X1 527 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 DICER1Q9UPY3 1922 aaKnown RBP10.61□□□□□ -0.71
USP54-204ENST00000422491 ANKRD12Q6UB98 2062 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 TNFRSF10AO00220 468 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 XPNPEP2O43895 674 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 HBP1O60381 514 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms