RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SLC17A6Q9P2U8 582 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 ZNF711Q9Y462 761 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 PSAT1Q9Y617 370 aa13.34□□□□□ -0.27
LIMS1-204ENST00000409441 A0A1W2PQU0 124 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 H0Y858 1186 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 HRO43593 1189 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 PLIN3O60664 434 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 CRTAMO95727 393 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 ELFN1P0C7U0 828 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 ZNF30P17039 623 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 TYK2P29597 1187 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 STX3Q13277 289 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 TAF1AQ15573 450 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-204ENST00000409441 CNGA3Q16281 694 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 N4BP2L1Q5TBK1 243 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-204ENST00000409441 SEL1L3Q68CR1 1132 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 SLC36A4Q6YBV0 504 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 GLT6D1Q7Z4J2 308 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 HSD11B1LQ7Z5J1 315 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 CRLF3Q8IUI8 442 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 DEFB119Q8N690 84 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 MAGEC3Q8TD91 643 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 SKA1Q96BD8 255 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 TMEM237Q96Q45 408 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 MECRQ9BV79 373 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 TMEM120AQ9BXJ8 343 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 C6orf106Q9H6K1 298 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-204ENST00000409441 KCNK13Q9HB14 408 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 THAP1Q9NVV9 213 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 ZSCAN32Q9NX65 697 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIMS1-204ENST00000409441 LNPEPQ9UIQ6 1025 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 DCTN4Q9UJW0 460 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 EMCNQ9ULC0 261 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 ZFR2Q9UPR6 939 aaKnown RBP13.33□□□□□ -0.28
LIMS1-204ENST00000409441 ARL5AQ9Y689 179 aa13.33□□□□□ -0.28
LIMS1-204ENST00000409441 A0A0G2JND7 137 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 C2orf81A6NN90 581 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 LDB2O43679 373 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 BUD23O43709 281 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 LZTS3O60299 673 aaPredicted RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 RPP40O75818 363 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 SLC4A1P02730 911 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 BCKDHBP21953 392 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 MAT2AP31153 395 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 HMGCLP35914 325 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 POLD2P49005 469 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 STC1P52823 247 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 KCNJ2P63252 427 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 RPL6Q02878 288 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 SRSF5Q13243 272 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 SGCGQ13326 291 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 ACOX1Q15067 660 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 FASTKD1Q53R41 847 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 TAF1BQ53T94 588 aaPredicted RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 KIAA1161Q6NSJ0 714 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 CLNKQ7Z7G1 428 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 LCA5Q86VQ0 697 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 HORMAD1Q86X24 394 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 TTC30BQ8N4P2 665 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 DCLK2Q8N568 766 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 PPHLN1Q8NEY8 458 aaKnown RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 GAB3Q8WWW8 586 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 KLK6Q92876 244 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 MFSD3Q96ES6 412 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 MCMBPQ9BTE3 642 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 SLC17A9Q9BYT1 436 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 CHRAC1Q9NRG0 131 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 SNX15Q9NRS6 342 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 C20orf96Q9NUD7 363 aaPredicted RBP13.32□□□□□ -0.28
LIMS1-204ENST00000409441 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 KCTD3Q9Y597 815 aa13.32□□□□□ -0.28
LIMS1-204ENST00000409441 HEATR9A2RTY3 570 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PSMD11O00231 422 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 TM7SF2O76062 418 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 HAUS5O94927 633 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PAK4O96013 591 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PROCP04070 461 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 C6P13671 934 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 LPOP22079 712 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-204ENST00000409441 GRK2P25098 689 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 NMBRP28336 390 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PPP2CBP62714 309 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PPP2CAP67775 309 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 LAMB3Q13751 1172 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 SEPT6Q14141 434 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PTPRCAPQ14761 206 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 KRT72Q14CN4 511 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 ZNF284Q2VY69 593 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 TMEM259Q4ZIN3 620 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 HSP90AA5PQ58FG0 334 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 KIAA0895LQ68EN5 471 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 RFLNAQ6ZTI6 216 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 Q6ZVL8 140 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 MTDHQ86UE4 582 aaKnown RBP13.31□□□□□ -0.28
LIMS1-204ENST00000409441 TRIM69Q86WT6 500 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 CNTN4Q8IWV2 1026 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 ZBTB44Q8NCP5 570 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 CADM4Q8NFZ8 388 aa13.31□□□□□ -0.28
LIMS1-204ENST00000409441 PPP1R14CQ8TAE6 165 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms