RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SPAG16Q8N0X2 631 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 FAM71DQ8N9W8 422 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 SLC35G2Q8TBE7 412 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 PNPT1Q8TCS8 783 aaKnown RBP7.26□□□□□ -1.25
SCN9A-202ENST00000409435 RLN3Q8WXF3 142 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 RORBQ92753 470 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 HSD17B14Q9BPX1 270 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 TMEM79Q9BSE2 394 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 ILKAPQ9H0C8 392 aaPredicted RBP7.26□□□□□ -1.25
SCN9A-202ENST00000409435 ZCWPW1Q9H0M4 648 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 C3orf14Q9HBI5 128 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 PCDH10Q9P2E7 1040 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 CDYLQ9Y232 598 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 PCDHGB3Q9Y5G1 929 aa7.26□□□□□ -1.25
SCN9A-202ENST00000409435 DNAJC25-GNG10A0A024R161 153 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RBM47A0AV96 593 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PPP1R3GB7ZBB8 358 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 F8W810 466 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 TSPAN6O43657 245 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CCNT2O60583 730 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 FYNP06241 537 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SRPRAP08240 638 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 FGRP09769 529 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KCNE1P15382 129 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF23P17027 643 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PTPN7P35236 360 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 NR2C2P49116 596 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 COL9A3Q14050 684 aaPredicted RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 DHX34Q14147 1143 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF846Q147U1 533 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 MIIPQ5JXC2 388 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ERN2Q76MJ5 926 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ZBED8Q8IZ13 594 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PPP1R14AQ96A00 147 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 NXPE2Q96DL1 559 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KCTD10Q9H3F6 313 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CCDC86Q9H6F5 360 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CATSPERZQ9NTU4 200 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ARL15Q9NXU5 204 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CHKBQ9Y259 395 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 V9GYQ6 96 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 A0A0X1KG70 313 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 A6NL46 340 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ERBB2P04626 1255 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CDH17Q12864 832 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 C1orf61Q13536 156 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CST6Q15828 149 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PDSS1Q5T2R2 415 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 AGAP9Q5VTM2 703 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 DCAF12L1Q5VU92 463 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KIAA1161Q6NSJ0 714 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 EIF3MQ7L2H7 374 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 TCEAL8Q8IYN2 117 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 POMGNT2Q8NAT1 580 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 MOSPD2Q8NHP6 518 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 BORCS5Q969J3 196 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 TUBB1Q9H4B7 451 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CDHR5Q9HBB8 845 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SLC39A1Q9NY26 324 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ALS2Q96Q42 1657 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 WDR27A2RRH5 827 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 FAM163BP0C2L3 166 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 GPR15P49685 360 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RAB28P51157 221 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KCNQ1P51787 676 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ARHGDIBP52566 201 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RRADP55042 308 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CCNIQ14094 377 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 POU6F1Q14863 301 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 NDUFAF6Q330K2 333 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 LRIT3Q3SXY7 679 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 TIMM50Q3ZCQ8 353 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 LDLRAP1Q5SW96 308 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 MZT2AQ6P582 158 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RSPO2Q6UXX9 243 aaPredicted RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SCUBE1Q8IWY4 988 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CACTIN-AS1Q8N1I8 211 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ADCY4Q8NFM4 1077 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 OR5B17Q8NGF7 314 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KCNE4Q8WWG9 221 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 HMCESQ96FZ2 354 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CACNG4Q9UBN1 327 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 TRPC4Q9UBN4 977 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PSMD13Q9UNM6 376 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ABCG2Q9UNQ0 655 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 NOX1Q9Y5S8 564 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 GLYATL1P3A0A0U1RQE8 302 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 EFCAB10A6NFE3 127 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 H3BUI4 141 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 MMP20O60882 483 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SPAG6O75602 509 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SLC25A12O75746 678 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SLC35G6P0C7Q6 338 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PRKAR1AP10644 381 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PRLRP16471 622 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 LPOP22079 712 aaPredicted RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 BMP8BP34820 402 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RCVRNP35243 200 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SPAM1P38567 509 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 COPZ1P61923 177 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms