RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 UBXN7O94888 489 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 CBX6O95503 412 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 TRBC1P01850 177 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ZNF8P17098 575 aaPredicted RBP11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 AMPD1P23109 780 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 NFKBIAP25963 317 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 MIPP30301 263 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 CASP14P31944 242 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PTGIRP43119 386 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 MAMLD1Q13495 774 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ZNF235Q14590 738 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 IL11RAQ14626 422 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 KIR2DS5Q14953 304 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PPP6R3Q5H9R7 873 aaPredicted RBP11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 FAM182AQ5T1J6 154 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ERMARDQ5T6L9 678 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ARMC12Q5T9G4 340 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 FAM92BQ6ZTR7 304 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PRSS42Q7Z5A4 293 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 MCOLN2Q8IZK6 566 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 LZTR1Q8N653 840 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 MLKLQ8NB16 471 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 SLC38A9Q8NBW4 561 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 FDCSPQ8NFU4 85 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 SH3KBP1Q96B97 665 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 EID2BQ96D98 161 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ING2Q9H160 280 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 UCK1Q9HA47 277 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 VPS18Q9P253 973 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 ATXN10Q9UBB4 475 aa11.72□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PCNX1Q96RV3 2341 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 MED13LQ71F56 2210 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 A0A1W2PQ67 120 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 C21orf140B9A014 251 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PES1O00541 588 aaKnown RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 DAPK3O43293 454 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 GRID2O43424 1007 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 NUAK1O60285 661 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 NELFEP18615 380 aaKnown RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 XRCC1P18887 633 aaPredicted RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 IL1R2P27930 398 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 PTPN4P29074 926 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 HNRNPH3P31942 346 aaKnown RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 NR6A1Q15406 480 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 TPD52L1Q16890 204 aaPredicted RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 TCP11X2Q5H9J9 407 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 HENMT1Q5T8I9 393 aaKnown RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 USP45Q70EL2 814 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 SNRNP40Q96DI7 357 aaKnown RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 SYT11Q9BT88 431 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 EPB41L1Q9H4G0 881 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 KLC4Q9NSK0 619 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 SEMA5BQ9P283 1151 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 CHKBQ9Y259 395 aa11.71□□□□□ -0.53
SPTLC1P3-201ENST00000403408 NIPBLQ6KC79 2804 aaeCLIP11.71□□□□□ -0.54
SPTLC1P3-201ENST00000403408 OR52A4PA6NMU1 304 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 TOX3O15405 576 aaPredicted RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 CCNYL3P0C7X3 344 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PSMA2P25787 234 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ELAVL4P26378 380 aaKnown RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 GRNP28799 593 aaKnown RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 CAPZBP47756 277 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 HCAR3P49019 387 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 CLCNKAP51800 687 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ITGA1P56199 1179 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 NIPAL4Q0D2K0 466 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PLA2G4EQ3MJ16 856 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PLEKHN1Q494U1 663 aaPredicted RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 KHDC1Q4VXA5 237 aaKnown RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 CRB2Q5IJ48 1285 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PRAMEF17Q5VTA0 474 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 CACHD1Q5VU97 1274 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 TXNRD3NBQ6F5E7 133 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PLEKHA7Q6IQ23 1121 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ACAD10Q6JQN1 1059 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 DCUN1D2Q6PH85 259 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ZNF517Q6ZMY9 492 aaPredicted RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 PPP1R3BQ86XI6 285 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ZNF547Q8IVP9 402 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 TEX26Q8N6G2 289 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 AOPEPQ8N6M6 819 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 INPP5DQ92835 1189 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 SLC41A2Q96JW4 573 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 AGPAT1Q99943 283 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 NT5MQ9NPB1 228 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 ASF1BQ9NVP2 202 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 NTNG1Q9Y2I2 539 aa11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 MAP1AP78559 2803 aaPredicted RBP11.7□□□□□ -0.54
SPTLC1P3-201ENST00000403408 MYO7BQ6PIF6 2116 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 TMEM191CA6NGB0 347 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 LRCH4O75427 683 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 RASSF9O75901 435 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 EBLN1P0CF75 366 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 IL4RP24394 825 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 HSPA9P38646 679 aaKnown RBP11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 MMP13P45452 471 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 SPINT3P49223 89 aa11.69□□□□□ -0.54
SPTLC1P3-201ENST00000403408 DSC2Q02487 901 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms