RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 GPIP06744 558 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 ATXN8OSP0DMR3 200 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 PSMB9P28065 219 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 RHDQ02161 417 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 ATXN7L2Q5T6C5 722 aaPredicted RBP18.39■□□□□ 0.53
USP48-204ENST00000400301 ALKAL1Q6UXT8 129 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 MS4A4AQ96JQ5 239 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 OLFM1Q99784 485 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 SBF2Q86WG5 1849 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 PTGER3P43115 390 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 GNPDA1P46926 289 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 LEPRP48357 1165 aaKnown RBP18.39■□□□□ 0.53
USP48-204ENST00000400301 ZBTB46Q86UZ6 589 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 ACVR1CQ8NER5 493 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 ELMO1Q92556 727 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 MAGED4Q96JG8 741 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 C1orf74Q96LT6 269 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 DACH2Q96NX9 599 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 KCNA7Q96RP8 456 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 NUDT4Q9NZJ9 180 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 AP3M1Q9Y2T2 418 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 LY75O60449 1722 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 KERAO60938 352 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 NTRK1P04629 796 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 COX7A2P14406 83 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 PIK3R6Q5UE93 754 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 TMCO5AQ8N6Q1 288 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 OR9Q1Q8NGQ5 310 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 ZNF599Q96NL3 588 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 CNOT6Q9ULM6 557 aaKnown RBP18.38■□□□□ 0.53
USP48-204ENST00000400301 DYRK1BQ9Y463 629 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 TAF1LQ8IZX4 1826 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 AURKAO14965 403 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 GABRR2P28476 465 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 SERINC3Q13530 473 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 SERPINA9Q86WD7 417 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 CDK15Q96Q40 435 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 NUSAP1Q9BXS6 441 aaKnown RBP18.38■□□□□ 0.53
USP48-204ENST00000400301 MARCH4Q9P2E8 410 aaPredicted RBP18.38■□□□□ 0.53
USP48-204ENST00000400301 ZNF490Q9ULM2 529 aaPredicted RBP18.38■□□□□ 0.53
USP48-204ENST00000400301 TLL2Q9Y6L7 1015 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 GLYATL1P3A0A0U1RQE8 302 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 ARSDP51689 593 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 ZNF678Q5SXM1 525 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 RANBP10Q6VN20 620 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 IGSF8Q969P0 613 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 FLRT1Q9NZU1 646 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 ADGRE2Q9UHX3 823 aa18.38■□□□□ 0.53
USP48-204ENST00000400301 DYTNA2CJ06 578 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 MTHFD1P11586 935 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 SLC26A3P40879 764 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 STC1P52823 247 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 TRIM16LQ309B1 348 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 GPR180Q86V85 440 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 OFCC1Q8IZS5 231 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 EXOSC4Q9NPD3 245 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 EPN2O95208 641 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 ITGB1P05556 798 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 EPS8Q12929 822 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 RRM2BQ7LG56 351 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 BPIFB6Q8NFQ5 453 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 ADI1Q9BV57 179 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.37■□□□□ 0.53
USP48-204ENST00000400301 CHCHD3Q9NX63 227 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 C3orf18Q9UK00 162 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 WDR47O94967 919 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 CHI3L1P36222 383 aaPredicted RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 INPP1P49441 399 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 CSTF3Q12996 717 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 GTF2H2Q13888 395 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 LYPLAL1Q5VWZ2 237 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 GTF2H2CQ6P1K8 395 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 NPAS4Q8IUM7 802 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 ANKLE1Q8NAG6 615 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 RORBQ92753 470 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 LRRC58Q96CX6 371 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 LRTM1Q9HBL6 345 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 SMPD3Q9NY59 655 aaPredicted RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 A0A0D9SEW6 157 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 HMX2A2RU54 273 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 ENPP3O14638 875 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 PRAMEF11O60813 436 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 STK16O75716 305 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 DDX5P17844 614 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 RPS9P46781 194 aaKnown RBP18.37■□□□□ 0.53
USP48-204ENST00000400301 ECT2LQ008S8 904 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 BROXQ5VW32 411 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 NECAB2Q7Z6G3 386 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 TMEM39AQ9NV64 488 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 TRIM17Q9Y577 477 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 U3KQV3 271 aa18.37■□□□□ 0.53
USP48-204ENST00000400301 PDLIM1O00151 329 aa18.36■□□□□ 0.53
USP48-204ENST00000400301 KPNA3O00505 521 aaPredicted RBP18.36■□□□□ 0.53
USP48-204ENST00000400301 GRID2O43424 1007 aa18.36■□□□□ 0.53
USP48-204ENST00000400301 TRMUO75648 421 aaKnown RBP18.36■□□□□ 0.53
USP48-204ENST00000400301 CATP04040 527 aaKnown RBP18.36■□□□□ 0.53
USP48-204ENST00000400301 AHI1Q8N157 1196 aa18.36■□□□□ 0.53
USP48-204ENST00000400301 KDM1BQ8NB78 822 aa18.36■□□□□ 0.53
USP48-204ENST00000400301 RNF208Q9H0X6 261 aa18.36■□□□□ 0.53
USP48-204ENST00000400301 TNKS2Q9H2K2 1166 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms