RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TWIST2Q8WVJ9 160 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 NXNL1Q96CM4 212 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 LENG8Q96PV6 779 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CADM1Q9BY67 442 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FGFBP2Q9BYJ0 223 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 U3KQV3 271 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SPATA31D1Q6ZQQ2 1576 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM240BA0A1B0GVZ2 78 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CASKO14936 926 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ZNF432O94892 652 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SMIM10L2AP0DMW4 78 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SMIM10L2BP0DMW5 78 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 HTR7P34969 479 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FASTKD3Q14CZ7 662 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 GRIK5Q16478 980 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 DRICH1Q6PGQ1 229 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 OR4A15Q8NGL6 344 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CDCA5Q96FF9 252 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 MRPL45Q9BRJ2 306 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 MED28Q9H204 178 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TMPRSS4Q9NRS4 437 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SALL4Q9UJQ4 1053 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 N6AMT1Q9Y5N5 214 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ELOVL7A1L3X0 281 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC28A2O43868 658 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TULP3O75386 442 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PAGE1O75459 146 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ANGPTL1O95841 491 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CCNE2O96020 404 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TPTEP56180 551 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SSTP61278 116 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FSTL1Q12841 308 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 KHDC1Q4VXA5 237 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PARP8Q8N3A8 854 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 ROPN1LQ96C74 230 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 EXOC2Q96KP1 924 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 TSSK3Q96PN8 268 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC4A9Q96Q91 983 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 CHCHD6Q9BRQ6 235 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 DSN1Q9H410 356 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM124BQ9H5Z6 455 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 GIT1Q9Y2X7 761 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 PCDHB9Q9Y5E1 797 aa10.2□□□□□ -0.78
LIMCH1-203ENST00000396595 EME2A4GXA9 379 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CLDN5O00501 218 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 MFSD11O43934 449 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 PRMT3O60678 531 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CILPO75339 1184 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 AMHP03971 560 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 C4BPAP04003 597 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 BUD31P41223 144 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CXCR3P49682 368 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 THOP1P52888 689 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 RPL19P84098 196 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 LIPEQ05469 1076 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 ENPEPQ07075 957 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CARTPTQ16568 116 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 RAET1GQ6H3X3 334 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CBR4Q8N4T8 237 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 TIFAQ96CG3 184 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 GBA3Q9H227 469 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 DCCP43146 1447 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 IFNGP01579 166 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 MAGEA12P43365 314 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 ASMTP46597 345 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CLCN2P51788 898 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CRYBB1P53674 252 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 ABRQ12979 859 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 TMIEQ8NEW7 156 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 C1GALT1C1Q96EU7 318 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 ERMAPQ96PL5 475 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 LMAN2LQ9H0V9 348 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC6A15Q9H2J7 730 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 CXorf21Q9HAI6 301 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 SPATA7Q9P0W8 599 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 RAB23Q9ULC3 237 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 NPEPPSL1A6NEC2 478 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 LRRC14BA6NHZ5 514 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 C1QTNF3-AMACRE9PGA6 284 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 H3BM21 787 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 TRIM3O75382 744 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 GCATO75600 419 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 SCELO95171 688 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 SNX4O95219 450 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 TRBC1P01850 177 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 PEX2P28328 305 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 FAUP35544 74 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 NOMO2Q5JPE7 1267 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 REP15Q6BDI9 236 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 UBE2R2Q712K3 238 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 TAMM41Q96BW9 452 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 KCTD5Q9NXV2 234 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 PDP1Q9P0J1 537 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 I3L521 148 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 ERAL1O75616 437 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 UGT2B17O75795 530 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 PSMA1P25786 263 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 BEX3Q00994 111 aa10.19□□□□□ -0.78
LIMCH1-203ENST00000396595 SIM2Q14190 667 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms