RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TUBGCP3Q96CW5 907 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 LINGO1Q96FE5 620 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 BOCQ9BWV1 1114 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CFHR5Q9BXR6 569 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 P2RY12Q9H244 342 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SYTL2Q9HCH5 934 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TLR9Q9NR96 1032 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SDR39U1Q9NRG7 319 aaPredicted RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CMTM6Q9NX76 183 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SLAMF8Q9P0V8 285 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 EIF2B4Q9UI10 523 aaKnown RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 VPS51Q9UID3 782 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 STOML2Q9UJZ1 356 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 E2F3O00716 465 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 HOXB8P17481 243 aaPredicted RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CSKP41240 450 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 MYBPC1Q00872 1141 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 MAPRE2Q15555 327 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TXNDC8Q6A555 127 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 DNAJB7Q7Z6W7 309 aaPredicted RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CAMK1DQ8IU85 385 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 LKAAEAR1Q8TD35 194 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 DLG3Q92796 817 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 VPS33AQ96AX1 596 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SLC29A1Q99808 456 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 IL17CQ9P0M4 197 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 DNMT3BQ9UBC3 853 aaKnown RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 AP4B1Q9Y6B7 739 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 MTA1Q13330 715 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 HACD2Q6Y1H2 254 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 AMIGO2Q86SJ2 522 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SLC15A3Q8IY34 581 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 ARL14EPQ8N8R7 260 aaPredicted RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TCF12Q99081 682 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 C1QTNF3Q9BXJ4 246 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TM6SF2Q9BZW4 377 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SARS2Q9NP81 518 aaKnown RBP13.26□□□□□ -0.29
CCDC3-202ENST00000378839 AP4S1Q9Y587 144 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 ST14Q9Y5Y6 855 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 IL12AP29459 219 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 CHN2P52757 468 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 SMAD3P84022 425 aaKnown RBP13.25□□□□□ -0.29
CCDC3-202ENST00000378839 NRF1Q16656 503 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 XKR7Q5GH72 579 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 MTX3Q5HYI7 312 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 KIAA1841Q6NSI8 718 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 RAB44Q7Z6P3 723 aaPredicted RBP13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ADCY4Q8NFM4 1077 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 HIPK3Q9H422 1215 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 COQ10BQ9H8M1 238 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 PRSS21Q9Y6M0 314 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 MICAL3Q7RTP6 2002 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 H0Y626 953 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 STX7O15400 261 aaKnown RBP13.25□□□□□ -0.29
CCDC3-202ENST00000378839 HOXA2O43364 376 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 OR6B1O95007 311 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ERVPABLB-1P60509 514 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ATP6V0D1P61421 351 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 HTRA3P83110 453 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 SEMG2Q02383 582 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 PAGE3Q5JUK9 113 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ANKS6Q68DC2 871 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 FAM117BQ6P1L5 589 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 MIER2Q8N344 545 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 PIH1D2Q8WWB5 315 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 CNBD2Q96M20 576 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 RETREG1Q9H6L5 497 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ABCD2Q9UBJ2 740 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 USP22Q9UPT9 525 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 SH3BP1Q9Y3L3 701 aa13.25□□□□□ -0.29
CCDC3-202ENST00000378839 ZNF839A8K0R7 811 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 MBL2P11226 248 aaPredicted RBP13.24□□□□□ -0.29
CCDC3-202ENST00000378839 LBPP18428 481 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 UGT1A6P19224 532 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 SLC6A2P23975 617 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 UFM1P61960 85 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 RARS2Q5T160 578 aaKnown RBP13.24□□□□□ -0.29
CCDC3-202ENST00000378839 BLOC1S3Q6QNY0 202 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 TAS2R42Q7RTR8 314 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 SATL1Q86VE3 508 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 ZSWIM9Q86XI8 627 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 TMEM126BQ8IUX1 230 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 ZNF296Q8WUU4 475 aaPredicted RBP13.24□□□□□ -0.29
CCDC3-202ENST00000378839 HBEGFQ99075 208 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 C1orf50Q9BV19 199 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 ADGRE3Q9BY15 652 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 CDH23Q9H251 3354 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 CCDC68Q9H2F9 335 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 IL21Q9HBE4 155 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 TMEM165Q9HC07 324 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 PLK2Q9NYY3 685 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 EGFL7Q9UHF1 273 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 CNOT6Q9ULM6 557 aaKnown RBP13.24□□□□□ -0.29
CCDC3-202ENST00000378839 ZNF711Q9Y462 761 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 H7C0S8 307 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 AP1G1O43747 822 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 ZNF821O75541 412 aaPredicted RBP13.24□□□□□ -0.29
CCDC3-202ENST00000378839 OR4F21O95013 312 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 PGM3O95394 542 aa13.24□□□□□ -0.29
CCDC3-202ENST00000378839 TRAP1Q12931 704 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms