RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 TMEM51Q9NW97 253 aa4.89□□□□□ -1.63
USP48-202ENST00000374730 PSMC3IPQ9P2W1 217 aaPredicted RBP4.89□□□□□ -1.63
USP48-202ENST00000374730 TSPAN16Q9UKR8 245 aa4.89□□□□□ -1.63
USP48-202ENST00000374730 SLC12A4Q9UP95 1085 aa4.89□□□□□ -1.63
USP48-202ENST00000374730 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.89□□□□□ -1.63
USP48-202ENST00000374730 CLUHO75153 1309 aa4.89□□□□□ -1.63
USP48-202ENST00000374730 PATJQ8NI35 1801 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SMIM35A0A1B0GVV1 85 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 LRRC14BA6NHZ5 514 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PRSS29PA6NIE9 313 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 LINC00473A8K010 186 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 E5RJQ4 531 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 F5H697 171 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PDHXO00330 501 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 MDM4O15151 490 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 CHADO15335 359 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TYROBPO43914 113 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PRPSAP2O60256 369 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 FAM155BO75949 473 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TMEM63AO94886 807 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ZWINTO95229 277 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 IFNB1P01574 187 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 CD48P09326 243 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ELFN1P0C7U0 828 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ZNF286BP0CG31 522 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 DESP17661 470 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TAC1P20366 129 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 AXLP30530 894 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SDC4P31431 198 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 HNRNPH1P31943 449 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 STIP1P31948 543 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 SKIV2L2P42285 1042 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 PTPN9P43378 593 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 CDH6P55285 790 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 GEMIN4P57678 1058 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 PROK1P58294 105 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 GPX6P59796 221 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 DYNLT1P63172 113 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 FKBP1BP68106 108 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ROR1Q01973 937 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PPARDQ03181 441 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 RNASELQ05823 741 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 CCDC15Q0P6D6 951 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 DPYSL3Q14195 570 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SPARCL1Q14515 664 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 KCNJ11Q14654 390 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 MAPRE1Q15691 268 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 FAM110CQ1W6H9 321 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 GOLGA7BQ2TAP0 167 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 GALNTL6Q49A17 601 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 BOLA3Q53S33 107 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 KCNT1Q5JUK3 1230 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 MARCH8Q5T0T0 291 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ANKRD22Q5VYY1 191 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 NUGGCQ68CJ6 796 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SLC9A4Q6AI14 798 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 OR6B2Q6IFH4 312 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TRNP1Q6NT89 227 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ERAP2Q6P179 960 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 NOTUMQ6P988 496 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SLC27A1Q6PCB7 646 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 C4orf22Q6V702 233 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 ZNF788Q6ZQV5 615 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 USP45Q70EL2 814 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SPATA21Q7Z572 469 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PPP1R32Q7Z5V6 425 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TMEM110Q86TL2 294 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SESTD1Q86VW0 696 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TTC30AQ86WT1 665 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 MAP7D3Q8IWC1 876 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 UNC45BQ8IWX7 931 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SRRM1Q8IYB3 904 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 PDIK1LQ8N165 341 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 KCTD6Q8NC69 237 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PSD4Q8NDX1 1056 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 BEST2Q8NFU1 509 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 OR6J1Q8NGC5 347 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SPATA18Q8TC71 538 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 MGARPQ8TDB4 240 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PYROXD1Q8WU10 500 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SLC35F5Q8WV83 523 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 RXFP2Q8WXD0 754 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 RNF157Q96PX1 679 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 TGS1Q96RS0 853 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 SMC6Q96SB8 1091 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PARK7Q99497 189 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 MRPL45Q9BRJ2 306 aaKnown RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 ZNF670Q9BS34 389 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 C1orf43Q9BWL3 253 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 GCOM2Q9BZD3 368 aaPredicted RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 TINAGL1Q9GZM7 467 aaPredicted RBP4.88□□□□□ -1.63
USP48-202ENST00000374730 DNAI2Q9GZS0 605 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 VPS37BQ9H9H4 285 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 CPNE5Q9HCH3 593 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 SLC40A1Q9NP59 571 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 PNPLA8Q9NP80 782 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 KCNK9Q9NPC2 374 aa4.88□□□□□ -1.63
USP48-202ENST00000374730 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.88□□□□□ -1.63
USP48-202ENST00000374730 FGFR1OP2Q9NVK5 253 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms