RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 NELFEP18615 380 aaKnown RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ITGA3P26006 1051 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PON1P27169 355 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 NOP2P46087 812 aaKnown RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PAPOLAP51003 745 aaKnown RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 STX17P56962 302 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 DPTQ07507 201 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 TRAF2Q12933 501 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ATP1A4Q13733 1029 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 LRP8Q14114 963 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 TAF3Q5VWG9 929 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 KLHL10Q6JEL2 608 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 DUS1LQ6P1R4 473 aaKnown RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 FAM92BQ6ZTR7 304 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ARCQ7LC44 396 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PRSS42Q7Z5A4 293 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PPP1R3BQ86XI6 285 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ARHGAP12Q8IWW6 846 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 FAM71AQ8IYT1 594 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PGBD5Q8N414 524 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 TMEM35BQ8NCS4 154 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ST6GALNAC3Q8NDV1 305 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 SPATA32Q96LK8 384 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 WDR24Q96S15 920 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 CHST8Q9H2A9 424 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 GPR83Q9NYM4 423 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNF624Q9P2J8 865 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 APEX2Q9UBZ4 518 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNHIT2Q9UHR6 403 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZDHHC9Q9Y397 364 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 COPG1Q9Y678 874 aaKnown RBP8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 PKDREJQ9NTG1 2253 aa8.36□□□□□ -1.07
HMGB1P39-201ENST00000366304 ESPNB1AK53 854 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 CREB3O43889 395 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 PRICKLE3O43900 615 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 RASSF9O75901 435 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 MT-ND3P03897 115 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 EBLN1P0CF75 366 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 F3P13726 295 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 CTPS1P17812 591 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 GPR1P46091 355 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SCNN1BP51168 640 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SNX16P57768 344 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NOMO3P69849 1222 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 PEX6Q13608 980 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 IHHQ14623 411 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 LLGL1Q15334 1064 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNF648Q5T619 568 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 CACHD1Q5VU97 1274 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NAA35Q5VZE5 725 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SPOCD1Q6ZMY3 1216 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 TMEM26Q6ZUK4 368 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 GDF7Q7Z4P5 450 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NOP9Q86U38 636 aaKnown RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SLC9B2Q86UD5 537 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 FJX1Q86VR8 437 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 FMR1NBQ8N0W7 255 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NPWQ8N729 165 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 ENDOVQ8N8Q3 282 aaKnown RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 FAM172AQ8WUF8 416 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 ITLN2Q8WWU7 325 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NELFBQ8WX92 580 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 NTAN1Q96AB6 310 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SH3KBP1Q96B97 665 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 DHTKD1Q96HY7 919 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 GSDMAQ96QA5 445 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 MCCC1Q96RQ3 725 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 EPB41L1Q9H4G0 881 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 RMND1Q9NWS8 449 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 COPG2Q9UBF2 871 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 CNOT8Q9UFF9 292 aaKnown RBP8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SLC23A2Q9UGH3 650 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 DNAJC12Q9UKB3 198 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SIK3Q9Y2K2 1263 aa8.35□□□□□ -1.07
HMGB1P39-201ENST00000366304 SVILO95425 2214 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 KIR2DS5A0A0G2JLQ3 304 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 A0A0G2JNG1 304 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 HEATR9A2RTY3 570 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 FADS2P1A8MWK0 482 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 KIR2DS3K7RE56 304 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 PSMA7O14818 248 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 TOX3O15405 576 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 MAN1A2O60476 641 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 PALMO75781 387 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 PEX11BO96011 259 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 CPP00450 1065 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 MMEP08473 750 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 STSP08842 583 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 BRAFP15056 766 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 CYP11B1P15538 503 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 RFC1P35251 1148 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 DEKP35659 375 aaKnown RBP8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 PTPN9P43378 593 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 CAPZBP47756 277 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 GLRBP48167 497 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 RPS15P62841 145 aaKnown RBP8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 POLR2LP62875 67 aaKnown RBP8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 PTSQ03393 145 aa8.34□□□□□ -1.07
HMGB1P39-201ENST00000366304 NSUN2Q08J23 767 aaKnown RBP eCLIP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms