RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 GOT1P17174 413 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 MAPKAPK2P49137 400 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 CSRP3P50461 194 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NDST2P52849 883 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ITGA8P53708 1063 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 PMS2P54278 862 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ARL4CP56559 192 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 DYNLT1P63172 113 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SARNPP82979 210 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 GPS1Q13098 491 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SEMA5AQ13591 1074 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SNX1Q13596 522 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 VMACQ2NL98 169 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 KIF19Q2TAC6 998 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 TMCO4Q5TGY1 634 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ITPRIPL1Q6GPH6 555 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 GRAMD4Q6IC98 578 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SDE2Q6IQ49 451 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 TIGD7Q6NT04 549 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ZNF449Q6P9G9 518 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 DARS2Q6PI48 645 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 CENPUQ71F23 418 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 IGDCC3Q8IVU1 814 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 KLHDC8BQ8IXV7 354 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 PDIK1LQ8N165 341 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NAT16Q8N8M0 369 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 RTL3Q8N8U3 475 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ATP6V0D2Q8N8Y2 350 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NUP43Q8NFH3 380 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 HTR3CQ8WXA8 447 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 PRCCQ92733 491 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 FGF11Q92914 225 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 IGSF8Q969P0 613 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 PGM2Q96G03 612 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 DDX50Q9BQ39 737 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 TMEM121Q9BTD3 319 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NEUROG2Q9H2A3 272 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NMUR1Q9HB89 426 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 USP29Q9HBJ7 922 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 XAB2Q9HCS7 855 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SPHK2Q9NRA0 654 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 DNAJC17Q9NVM6 304 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 MARCH2Q9P0N8 246 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 EIF2B4Q9UI10 523 aaKnown RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 STOML2Q9UJZ1 356 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ACSL6Q9UKU0 697 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ZNF638Q14966 1978 aaKnown RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 GOLGA6CA6NDK9 693 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 NUDT19A8MXV4 375 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 PRRT4C9JH25 899 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 H7C0C1 242 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 SHOXO15266 292 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 RIPK2O43353 540 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 MFSD11O43934 449 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 CACNG3O60359 315 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 BRINP1O60477 761 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TLR5O60602 858 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 IFNB1P01574 187 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 IGLV3-19P01714 112 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 FAM153BP0C7A2 387 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 MYZAPP0CAP1 466 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 GOLGA6DP0CG33 693 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 CDK4P11802 303 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 ERCC2P18074 760 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 EPHB2P29323 1055 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 ATP5DP30049 168 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 GARSP41250 739 aaKnown RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 ATP5OP48047 213 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 CSNK1EP49674 416 aaKnown RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 UCNP55089 124 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TBX4P57082 545 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TMPRSS3P57727 454 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 PITX1P78337 314 aaPredicted RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 IFI35P80217 286 aaPredicted RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 GBE1Q04446 702 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 GABPB1Q06547 395 aaPredicted RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 TAF10Q12962 218 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TARDBPQ13148 414 aaKnown RBP eCLIP7□□□□□ -1.29
VPS13A-201ENST00000355766 LY6DQ14210 128 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 KCNJ11Q14654 390 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 STAT4Q14765 748 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 STARD3Q14849 445 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TRADDQ15628 312 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 UAP1Q16222 522 aaPredicted RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 ANO4Q32M45 955 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 TBC1D25Q3MII6 688 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 PARP15Q460N3 678 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 FAM153CQ494X1 144 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 FUT11Q495W5 492 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 DNAJC21Q5F1R6 531 aaKnown RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 HECTD3Q5T447 861 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 HES3Q5TGS1 186 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 AFMIDQ63HM1 303 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 LRRC31Q6UY01 552 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 ZNF783Q6ZMS7 281 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 BBS7Q8IWZ6 715 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 GSPT2Q8IYD1 628 aaKnown RBP7□□□□□ -1.29
VPS13A-201ENST00000355766 UMODL1-AS1Q8N2C9 162 aa7□□□□□ -1.29
VPS13A-201ENST00000355766 NAT8LQ8N9F0 302 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms