RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MTHFRP42898 656 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 MASP1P48740 699 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 NDUFV1P49821 464 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TPD52P55327 224 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 HERVK_113P63132 956 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 PPP1R8Q12972 351 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 LY6KQ17RY6 165 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 GPR158Q5T848 1215 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 KANK2Q63ZY3 851 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 LAIR1Q6GTX8 287 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 GLYATQ6IB77 296 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SULT1C3Q6IMI6 304 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ARHGAP36Q6ZRI8 547 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ISCA2Q86U28 154 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 PIM3Q86V86 326 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 LRRC49Q8IUZ0 686 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 KLHDC8BQ8IXV7 354 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 IPMKQ8NFU5 416 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 OR7G1Q8NGA0 311 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SLC2A14Q8TDB8 520 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 EXT2Q93063 718 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TUBGCP3Q96CW5 907 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 KIF12Q96FN5 646 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ITCHQ96J02 903 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CELF6Q96J87 481 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 NSMCE2Q96MF7 247 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 DACH2Q96NX9 599 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 YME1L1Q96TA2 773 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TBL1YQ9BQ87 522 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 BCL7BQ9BQE9 202 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 RHNO1Q9BSD3 238 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 C17orf80Q9BSJ5 609 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 FICDQ9BVA6 458 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ERVK-6Q9BXR3 956 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 FAM124BQ9H5Z6 455 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 MARCH7Q9H992 704 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SPC25Q9HBM1 224 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 MID1IP1Q9NPA3 183 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 RNF19AQ9NV58 838 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 IL37Q9NZH6 218 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TBC1D14Q9P2M4 693 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ERVK-18Q9QC07 812 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 AASSQ9UDR5 926 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 GJD2Q9UKL4 321 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 STAP1Q9ULZ2 295 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ADAMTS5Q9UNA0 930 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 PCDHGB1Q9Y5G3 927 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 COL4A5P29400 1685 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 EVPLQ92817 2033 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 G3V2T6 193 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 M0QX08 132 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 AZIN1O14977 448 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 GAS2O43903 313 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 TBC1D4O60343 1298 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CACNG3O60359 315 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 FGF4P08620 206 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 ARF4P18085 180 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 LBPP18428 481 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SERPINB10P48595 397 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CLCNKBP51801 687 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CDKN2DP55273 166 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TPI1P60174 286 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 UFM1P61960 85 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SLC14A2Q15849 920 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 FSCN1Q16658 493 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 NOMO2Q5JPE7 1267 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SLX4IPQ5VYV7 408 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SPATC1Q76KD6 591 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 P2RY8Q86VZ1 359 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 HEATR4Q86WZ0 1026 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 POC5Q8NA72 575 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 MCOLN3Q8TDD5 553 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 FRS2Q8WU20 508 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 SEPT1Q8WYJ6 367 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 TEPSINQ96N21 525 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 CAMKK2Q96RR4 588 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 WDR6Q9NNW5 1121 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 ITM2CQ9NQX7 267 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 OSGIN1Q9UJX0 560 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 NUDT5Q9UKK9 219 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 PNMA8BQ9ULN7 279 aaPredicted RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 PCDHGA10Q9Y5H3 936 aa6.74□□□□□ -1.33
VPS39-202ENST00000348544 BRCA1P38398 1863 aaKnown RBP6.74□□□□□ -1.33
VPS39-202ENST00000348544 ISPDA4D126 451 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NCAM2O15394 837 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TULP3O75386 442 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 BEST1O76090 585 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ARIH2O95376 493 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FYNP06241 537 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GSNP06396 782 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MMP10P09238 476 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RAP2AP10114 183 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRKCAP17252 672 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NAT1P18440 290 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRKACGP22612 351 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 IL12AP29459 219 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CHRNA5P30532 468 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GRK3P35626 688 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 OAZ1P54368 228 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RACK1P63244 317 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms