RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 AGO1Q9UL18 857 aaKnown RBP12.33□□□□□ -0.43
SNRNP48-201ENST00000342415 SH3BP1Q9Y3L3 701 aa12.33□□□□□ -0.43
SNRNP48-201ENST00000342415 COL6A1P12109 1028 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 GPR15P49685 360 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 NDST2P52849 883 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 IST1P53990 364 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 HERVK_113P63132 956 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 GALNT2Q10471 571 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ATG14Q6ZNE5 492 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ANKRD49Q8WVL7 239 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 KBTBD7Q8WVZ9 684 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 TMEM40Q8WWA1 233 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 RTP4Q96DX8 246 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 MUS81Q96NY9 551 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ERVK-6Q9BXR3 956 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 SUCOQ9UBS9 1254 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 TRIM17Q9Y577 477 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 PCDHB7Q9Y5E2 793 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 A0A0U1RQS6 177 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 A0A1B0GTW7 788 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 BBIP1A8MTZ0 92 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 F8W810 466 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 DCLK1O15075 740 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 CNOT3O75175 753 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 CHRM5P08912 532 aaPredicted RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 PROZP22891 400 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 WARSP23381 471 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ATP5C1P36542 298 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 NNMTP40261 264 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 TTPAP49638 278 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ARSDP51689 593 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 RPS24P62847 133 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 AHSA2Q719I0 299 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 LILRA2Q8N149 483 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 APOL4Q9BPW4 351 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 DUSP12Q9UNI6 340 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ANKRD36CQ5JPF3 1778 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 TCAF2A6NFQ2 919 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 RFXANKO14593 260 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ANGPTL1O95841 491 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 MYCLP1P12525 358 aaPredicted RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 COX7A2P14406 83 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 HOXA11P31270 313 aaPredicted RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ALDH9A1P49189 494 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 AFF1P51825 1210 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 SIRPB2Q5JXA9 342 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 CES4AQ5XG92 561 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 STEAP4Q687X5 459 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 RNF19BQ6ZMZ0 732 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 DDX53Q86TM3 631 aaKnown RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 CLDN19Q8N6F1 224 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 GTF3C2Q8WUA4 911 aaPredicted RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 NTAN1Q96AB6 310 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 KIFC1Q9BW19 673 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 SMOXQ9NWM0 555 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ZNF490Q9ULM2 529 aaPredicted RBP12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 ST14Q9Y5Y6 855 aa12.33□□□□□ -0.44
SNRNP48-201ENST00000342415 DOCK2Q92608 1830 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 IGKV6-21A0A0C4DH24 114 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 H3BN98 237 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 TFECO14948 347 aaPredicted RBP12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 B4GAT1O43505 415 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 FAM189A1O60320 539 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ALDH1A2O94788 518 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ITPKAP23677 461 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 FMO3P31513 532 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 IRF8Q02556 426 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 CCL14Q16627 93 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 SYT16Q17RD7 645 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ZC3H12BQ5HYM0 836 aaKnown RBP12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ARMC12Q5T9G4 340 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 TTC23LQ6PF05 361 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 KLHL35Q6PF15 583 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 HIPK1Q86Z02 1210 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 KLHL23Q8NBE8 558 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 TRPV3Q8NET8 790 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ROPN1LQ96C74 230 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 PRICKLE1Q96MT3 831 aaPredicted RBP12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ATG10Q9H0Y0 220 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 GPIP06744 558 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 CCDC159P0C7I6 412 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 CRATP43155 626 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 DGKEP52429 567 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ATP6V0D1P61421 351 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 PLD1Q13393 1074 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 MEP1AQ16819 746 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ZBED5Q49AG3 693 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 CCNYL2Q5T2Q4 361 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ARMC4Q5T2S8 1044 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 FAM219BQ5XKK7 198 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 AFTPHQ6ULP2 937 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ERMP1Q7Z2K6 904 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 CACUL1Q86Y37 369 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 GANCQ8TET4 914 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 TMBIM1Q969X1 311 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 PYCR2Q96C36 320 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 ISOC1Q96CN7 298 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 NODALQ96S42 347 aa12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 LSM7Q9UK45 103 aaKnown RBP12.32□□□□□ -0.44
SNRNP48-201ENST00000342415 VPS4AQ9UN37 437 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms