RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 DSEQ9UL01 958 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 ARIH1Q9Y4X5 557 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 PTPRJQ12913 1337 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 GOLGA8IPA6NC78 632 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 GOLGA8JA6NMD2 632 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 K7ENM7 598 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 NME4O00746 187 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 SLC16A4O15374 487 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 TFEBP19484 476 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 IL32P24001 234 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 RBL1P28749 1068 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 YWHABP31946 246 aaKnown RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 ACTR2P61160 394 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 WDR5P61964 334 aaKnown RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 TNFAIP2Q03169 654 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 MBTD1Q05BQ5 628 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 BNIP2Q12982 314 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 KCNT1Q5JUK3 1230 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 FAM219BQ5XKK7 198 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 CCBE1Q6UXH8 406 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 PRR23CQ6ZRP0 262 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 RBM23Q86U06 439 aaKnown RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 GALNT12Q8IXK2 581 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 EID3Q8N140 333 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 ZCCHC7Q8N3Z6 543 aaKnown RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 MCUQ8NE86 351 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 LHFPL5Q8TAF8 219 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 AFG1LQ8WV93 481 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 LRRC39Q96DD0 335 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 CENPNQ96H22 339 aaPredicted RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 MCEEQ96PE7 176 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 APOBEC3GQ9HC16 384 aaKnown RBP5.56□□□□□ -1.52
CSDE1-202ENST00000339438 ZFP14Q9HCL3 533 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 SLC52A3Q9NQ40 469 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 TIGARQ9NQ88 270 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 CHRAC1Q9NRG0 131 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 SLC9A2Q9UBY0 812 aa5.56□□□□□ -1.52
CSDE1-202ENST00000339438 EVPLLA8MZ36 301 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 H3BQ06 376 aaPredicted RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 TREHO43280 583 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 DNAJB5O75953 348 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 KRT5P13647 590 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 TGFBR2P37173 567 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 ENPEPQ07075 957 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 CETN1Q12798 172 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 EIF4EBP2Q13542 120 aaPredicted RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 MFSD13AQ14CX5 517 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 STK11Q15831 433 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 DDR2Q16832 855 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SMTNL2Q2TAL5 461 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 UGT3A2Q3SY77 523 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LGSNQ5TDP6 509 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LCN8Q6JVE9 175 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 HACD2Q6Y1H2 254 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 GALNT7Q86SF2 657 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 RETREG3Q86VR2 466 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SFRP1Q8N474 314 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LRRC71Q8N4P6 559 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 KDM1BQ8NB78 822 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 CHDHQ8NE62 594 aaPredicted RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 PHOSPHO2Q8TCD6 241 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 CYGBQ8WWM9 190 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 BIRC7Q96CA5 298 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 BEGAINQ9BUH8 593 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 C1QTNF1Q9BXJ1 281 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 MIR1-1HGQ9H1L0 117 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 ELAC1Q9H777 363 aaKnown RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LIN7BQ9HAP6 207 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SPAG4Q9NPE6 437 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 DTLQ9NZJ0 730 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF221Q9UK13 617 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 TBC1D24Q9ULP9 559 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 HEATR9A2RTY3 570 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LCHNA4D1U4 455 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 WDR64B1ANS9 1081 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 FXYD1O00168 92 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SDHDO14521 159 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 NEMP1O14524 444 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 MTSS1O43312 755 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF780AO75290 641 aaPredicted RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SCO1O75880 301 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 CLTBP09497 229 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 RPS9P46781 194 aaKnown RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 GABARAPL2P60520 117 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 IRF9Q00978 393 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 OCA2Q04671 838 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LAMC2Q13753 1193 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 IRF3Q14653 427 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 PDK2Q15119 407 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 PITRM1Q5JRX3 1037 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 RBM48Q5RL73 367 aaKnown RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 LAIR1Q6GTX8 287 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 DARS2Q6PI48 645 aaKnown RBP5.55□□□□□ -1.52
CSDE1-202ENST00000339438 FUNDC1Q8IVP5 155 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 ACVR1CQ8NER5 493 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 RSAD2Q8WXG1 361 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 HDAC10Q969S8 669 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 PPP1R36Q96LQ0 422 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 RIPOR3Q96MK2 946 aa5.55□□□□□ -1.52
CSDE1-202ENST00000339438 SPATA33Q96N06 139 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms