RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LRRC40Q9H9A6 602 aa15.64■□□□□ 0.09
CLN3-201ENST00000333496 PIH1D1Q9NWS0 290 aaKnown RBP15.64■□□□□ 0.09
CLN3-201ENST00000333496 LRIT1Q9P2V4 623 aa15.64■□□□□ 0.09
CLN3-201ENST00000333496 APPL1Q9UKG1 709 aa15.64■□□□□ 0.09
CLN3-201ENST00000333496 DRG1Q9Y295 367 aaKnown RBP15.64■□□□□ 0.09
CLN3-201ENST00000333496 PCDHB1Q9Y5F3 818 aa15.64■□□□□ 0.09
CLN3-201ENST00000333496 C2orf81A6NN90 581 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 GPR89AB7ZAQ6 455 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 TAF4O00268 1085 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 NUDT21O43809 227 aaKnown RBP15.63■□□□□ 0.09
CLN3-201ENST00000333496 ZSCAN5DPP0CG00 497 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 GPR89BP0CG08 455 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 ACP5P13686 325 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 TPH1P17752 444 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 CCL7P80098 99 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 XIAPP98170 497 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 ST3GAL2Q16842 350 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 ZNF547Q8IVP9 402 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 ARL14Q8N4G2 192 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 ZCCHC14Q8WYQ9 949 aaKnown RBP15.63■□□□□ 0.09
CLN3-201ENST00000333496 SLC23A2Q9UGH3 650 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 FEZ2Q9UHY8 353 aaPredicted RBP15.63■□□□□ 0.09
CLN3-201ENST00000333496 FKBPLQ9UIM3 349 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 KCNK6Q9Y257 313 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 USP24Q9UPU5 2620 aa15.63■□□□□ 0.09
CLN3-201ENST00000333496 TMEM8BA6NDV4 472 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 PSMD3O43242 534 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 VEGFDO43915 354 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 CSO75390 466 aaKnown RBP15.62■□□□□ 0.09
CLN3-201ENST00000333496 CDK14O94921 469 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 CRTAMO95727 393 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 PNLIPP16233 465 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 KCNJ1P48048 391 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 ZNF140P52738 457 aaPredicted RBP15.62■□□□□ 0.09
CLN3-201ENST00000333496 PDX1P52945 283 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 TMEM115Q12893 351 aaPredicted RBP15.62■□□□□ 0.09
CLN3-201ENST00000333496 KCTD19Q17RG1 926 aaPredicted RBP15.62■□□□□ 0.09
CLN3-201ENST00000333496 LONRF2Q1L5Z9 754 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 ISXQ2M1V0 245 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 MICALCLQ6ZW33 695 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 RASGEF1CQ8N431 466 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 PRELID2Q8N945 189 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 MAIP1Q8WWC4 291 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 ANKRD7Q92527 254 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 MS4A14Q96JA4 679 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 DEPDC7Q96QD5 511 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 TBC1D29Q9UFV1 150 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 ZMIZ1Q9ULJ6 1067 aa15.62■□□□□ 0.09
CLN3-201ENST00000333496 A6NCN8 305 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PPM1DO15297 605 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 TCEA3O75764 348 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PRAMEF1O95521 474 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 RPL22P35268 128 aaKnown RBP15.61■□□□□ 0.09
CLN3-201ENST00000333496 FDFT1P37268 417 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 GRIA1P42261 906 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CYP4F3Q08477 520 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PEX6Q13608 980 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ITGA9Q13797 1035 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 RTP5Q14D33 572 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 GPRC6AQ5T6X5 926 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CRTC3Q6UUV7 619 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ZNF438Q7Z4V0 828 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SPRED1Q7Z699 444 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 C11orf96Q7Z7L8 435 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 DDHD1Q8NEL9 900 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 OR52K1Q8NGK4 314 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 GDAP1Q8TB36 358 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ZNF398Q8TD17 642 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 LRRC45Q96CN5 670 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 C19orf43Q9BQ61 176 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 NRSN2Q9GZP1 204 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CCDC86Q9H6F5 360 aaKnown RBP15.61■□□□□ 0.09
CLN3-201ENST00000333496 RAB6BQ9NRW1 208 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SMOXQ9NWM0 555 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 DKK4Q9UBT3 224 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ENTPD2Q9Y5L3 495 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 TRBV23OR9-2A0A075B6M9 112 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PRR19A6NJB7 356 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ERI2A8K979 691 aaKnown RBP15.61■□□□□ 0.09
CLN3-201ENST00000333496 AGAP14A8MT82 685 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CCL22O00626 93 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 KMOO15229 486 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SRP72O76094 671 aaKnown RBP15.61■□□□□ 0.09
CLN3-201ENST00000333496 SUN1O94901 812 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 ACTN2P35609 894 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 TMPRSS15P98073 1019 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 B4GALNT1Q00973 533 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PDE1BQ01064 536 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SEMA5AQ13591 1074 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SPIDRQ14159 915 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 POU6F1Q14863 301 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 NR1D2Q14995 579 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 PLA2G4EQ3MJ16 856 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 RBM44Q6ZP01 1051 aaKnown RBP15.61■□□□□ 0.09
CLN3-201ENST00000333496 CFAP47Q6ZTR5 3102 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 LRRTM4Q86VH4 590 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CCNJLQ8IV13 435 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 SFRP1Q8N474 314 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 CCDC89Q8N998 374 aa15.61■□□□□ 0.09
CLN3-201ENST00000333496 Q8N9G6 341 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms