RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ANKRD34BA5PLL1 514 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 M0R2Z0 102 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PLSCR1O15162 318 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 TLR5O60602 858 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZC3H11AO75152 810 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 JUNP05412 331 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 FGFR1P11362 822 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PKMP14618 531 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 TGM2P21980 687 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RPS3P23396 243 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CRATP43155 626 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CAMLGP49069 296 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RPS3AP61247 264 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CAMK2DQ13557 499 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 BMT2Q1RMZ1 405 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 COL13A1Q5TAT6 717 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 C12orf40Q86WS4 652 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF547Q8IVP9 402 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 HERC6Q8IVU3 1022 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 LINC00469Q8N7U9 141 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RELL2Q8NC24 303 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC37A3Q8NCC5 494 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SPATA9Q9BWV2 254 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 QRSL1Q9H0R6 528 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CNOT8Q9UFF9 292 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PSAT1Q9Y617 370 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 BRINP1O60477 761 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CRYZL1O95825 349 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB3AP20336 220 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 MMP8P22894 467 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 DCKP27707 260 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GNRHRP30968 328 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF81P51508 661 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RIDAP52758 137 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RPL24P83731 157 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CTDSPL2Q05D32 466 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CELF3Q5SZQ8 465 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 USPL1Q5W0Q7 1092 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 DCXRQ7Z4W1 244 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 HSD17B13Q7Z5P4 300 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 JAZF1Q86VZ6 243 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 UBR7Q8N806 425 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM35BQ8NCS4 154 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GLYATL2Q8WU03 294 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CCDC107Q8WV48 283 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNRF4Q8WWF5 429 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 LINGO1Q96FE5 620 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 HERPUD2Q9BSE4 406 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 NAT9Q9BTE0 207 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SORBS1Q9BX66 1292 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 UGT2B28Q9BY64 529 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SOX21Q9Y651 276 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM205CA6NFA0 338 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SNAP91O60641 907 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 F2P00734 622 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PLGP00747 810 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PTNP21246 168 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CBLP22681 906 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GNA15P30679 374 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 MAPK8P45983 427 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 HERV-K104P61576 105 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ST3GAL4Q11206 333 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GPAT3Q53EU6 434 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 CLVS2Q5SYC1 327 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PGM2L1Q6PCE3 622 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF461Q8TAF7 563 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 RHEBL1Q8TAI7 183 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PYDC1Q8WXC3 89 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 HIST1H2AAQ96QV6 131 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZFYVE28Q9HCC9 887 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 POT1Q9NUX5 634 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SUSD2Q9UGT4 822 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 COMMD3-BMI1R4GMX3 469 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 FRMPD2Q68DX3 1309 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 NCAM2O15394 837 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 NRP2O60462 931 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 PCDH8O95206 1070 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GDF11O95390 407 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 APRTP07741 180 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 FBLN1P23142 703 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GLDCP23378 1020 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 LCN1P31025 176 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 EVI2BP34910 448 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 DGKQP52824 942 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 UBXN2AP68543 259 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 NTRK2Q16620 822 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF790Q6PG37 636 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 SMARCD1Q96GM5 515 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 TLR10Q9BXR5 811 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 GPR63Q9BZJ6 419 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ULBP3Q9BZM4 244 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ILKAPQ9H0C8 392 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 NUDT4Q9NZJ9 180 aa7.59□□□□□ -1.19
LIMCH1-201ENST00000313860 ATP6AP2A0A1C7CYW4 349 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 MTMR11A4FU01 709 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 M0QYV0 167 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 HOXA2O43364 376 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ATP6AP2O75787 350 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 AKAP3O75969 853 aa7.59□□□□□ -1.2
LIMCH1-201ENST00000313860 ARFRP1Q13795 201 aa7.59□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms