RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GRIN3AQ8TCU5 1115 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 CSGALNACT1Q8TDX6 532 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 IRF2BPLQ9H1B7 796 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 UNC93B1Q9H1C4 597 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TAS2R14Q9NYV8 317 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 NFASCO94856 1347 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SLITRK3O94933 977 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 AP2S1P53680 142 aaPredicted RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ATXN1P54253 815 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PPP1R15BQ5SWA1 713 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 OTOP1Q7RTM1 612 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PGLYRP2Q96PD5 576 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 UBE2Q2LH0YL09 131 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 AQP1P29972 269 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 UBR7Q8N806 425 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 ULBP1Q9BZM6 244 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 FBXO5Q9UKT4 447 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 TRIM64CA6NLI5 447 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CCRL2O00421 344 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PEX2P28328 305 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PPP3CAQ08209 521 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 IDNKQ5T6J7 187 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CMTR2Q8IYT2 770 aaKnown RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 MRPL9Q9BYD2 267 aaKnown RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CNOT6Q9ULM6 557 aaKnown RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SLC2A2P11168 524 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 RTP1P59025 263 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 DNAJB7Q7Z6W7 309 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 RALGPS2Q86X27 583 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SLC44A1Q8WWI5 657 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CCDC86Q9H6F5 360 aaKnown RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SETBP1Q9Y6X0 1596 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 UGT2B4P06133 528 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PLEKHH3Q7Z736 793 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 FAM35AQ86V20 835 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 HSFY1Q96LI6 401 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 TBC1D17Q9HA65 648 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 BPIFA1Q9NP55 256 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CD320Q9NPF0 282 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PHF24Q9UPV7 400 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CARNS1A5YM72 827 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 OR6C70A6NIJ9 312 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SCELO95171 688 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 KLRC2P26717 231 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 AQP4P55087 323 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SOX10P56693 466 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PEX6Q13608 980 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 PHF13Q86YI8 300 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CDH7Q9ULB5 785 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 MYO3AQ8NEV4 1616 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 I3L521 148 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SLC9A3R1O14745 358 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CCNB2O95067 398 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 MPSTP25325 297 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 ABRQ12979 859 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 VMACQ2NL98 169 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 EML3Q32P44 896 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 CRTC2Q53ET0 693 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 RBM48Q5RL73 367 aaKnown RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 OGFRL1Q5TC84 451 aaPredicted RBP13.78□□□□□ -0.2
CSPG4-201ENST00000308508 OR4C6Q8NH72 309 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF570Q96NI8 536 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 SEMA3CQ99985 751 aa13.78□□□□□ -0.2
CSPG4-201ENST00000308508 A0A075B6Q4 140 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 H3BM21 787 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ITPKBP27987 946 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 NTRK3Q16288 839 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 RIOX2Q8IUF8 465 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ARRDC4Q8NCT1 418 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ADAMTS15Q8TE58 950 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 LPGAT1Q92604 370 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 HDAC10Q969S8 669 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 IL25Q9H293 177 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 DENND2DQ9H6A0 471 aaPredicted RBP13.77□□□□□ -0.2
CSPG4-201ENST00000308508 LRRC4CQ9HCJ2 640 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 MTRRQ9UBK8 725 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 PRMT3O60678 531 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 CYB5AP00167 134 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 INSRRP14616 1297 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 DLG2Q15700 870 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ABCA11PQ4W5N1 156 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ANO7Q6IWH7 933 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 HMBOX1Q6NT76 420 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 C11orf65Q8NCR3 313 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 A0A1W2PPM1 405 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ZSCAN5BA6NJL1 495 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 CHRNA5P30532 468 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 GNALP38405 381 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 RPL6Q02878 288 aaKnown RBP13.77□□□□□ -0.2
CSPG4-201ENST00000308508 ADGRE1Q14246 886 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 WSCD2Q2TBF2 565 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 KCNK18Q7Z418 384 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 SDR16C5Q8N3Y7 309 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 AGBL3Q8NEM8 1001 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 DQX1Q8TE96 717 aaKnown RBP13.77□□□□□ -0.2
CSPG4-201ENST00000308508 TWIST2Q8WVJ9 160 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 TBATAQ96M53 351 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 SCGB3A2Q96PL1 93 aa13.77□□□□□ -0.2
CSPG4-201ENST00000308508 MCMBPQ9BTE3 642 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms