RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GPSM3Q9Y4H4 160 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 ST14Q9Y5Y6 855 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SLC30A1Q9Y6M5 507 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TP53BP1Q12888 1972 aaPredicted RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 ASCC3Q8N3C0 2202 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 ESYT3A0FGR9 886 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 AGAP14A8MT82 685 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TRIM38O00635 465 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CTSEP14091 401 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 FOXN2P32314 431 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 BLKP51451 505 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CACNG1Q06432 222 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TMEM115Q12893 351 aaPredicted RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 SUZ12Q15022 739 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 BBS9Q3SYG4 887 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 PYCR3Q53H96 274 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 HP1BP3Q5SSJ5 553 aaPredicted RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 PIP4P1Q86T03 277 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 SERPINA9Q86WD7 417 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 NAXDQ8IW45 347 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 NXPE1Q8N323 547 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 EID2Q8N6I1 236 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CEP112Q8N8E3 955 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 RASGEF1AQ8N9B8 481 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 DDHD1Q8NEL9 900 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 WHRNQ9P202 907 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 VPS18Q9P253 973 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CRLS1Q9UJA2 301 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 UTP11Q9Y3A2 253 aaKnown RBP12.62□□□□□ -0.39
SS18-202ENST00000269138 MAD1L1Q9Y6D9 718 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 CEP250Q9BV73 2442 aa12.62□□□□□ -0.39
SS18-202ENST00000269138 TRBV5-4A0A0C4DH59 114 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 YY2O15391 372 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 NUAK1O60285 661 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 CDK14O94921 469 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 AK4P27144 223 aaPredicted RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 ARNTP27540 789 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 CTSCP53634 463 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 PRAMEP78395 509 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 B4GALNT1Q00973 533 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 SEMA3AQ14563 771 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 DBN1Q16643 649 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 DEFB133Q30KQ1 61 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 GPR33Q49SQ1 333 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 ANKRD20A4Q4UJ75 823 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 DNTTIP2Q5QJE6 756 aaKnown RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 LDLRAP1Q5SW96 308 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 CRTC3Q6UUV7 619 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 NRROSQ86YC3 692 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 BBOF1Q8ND07 529 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 DEFB124Q8NES8 71 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 OR4L1Q8NH43 312 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 RHBDD1Q8TEB9 315 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 PEX13Q92968 403 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 STAMBPL1Q96FJ0 436 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 OR2M4Q96R27 311 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 WDR83Q9BRX9 315 aaKnown RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 BOCQ9BWV1 1114 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 RAB17Q9H0T7 212 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 IL1RAPL1Q9NZN1 696 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 SAMD15Q9P1V8 674 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 MARCH4Q9P2E8 410 aaPredicted RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 DMGDHQ9UI17 866 aaKnown RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 TDRD6O60522 2096 aaKnown RBP12.61□□□□□ -0.39
SS18-202ENST00000269138 DMXL1Q9Y485 3027 aa12.61□□□□□ -0.39
SS18-202ENST00000269138 CFAP54Q96N23 3096 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 FAM237BA0A1B0GVD1 139 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 MAGEB16A2A368 324 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 BHMG1C9JSJ3 638 aaPredicted RBP12.6□□□□□ -0.39
SS18-202ENST00000269138 GOLGA8KD6RF30 607 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 LMO7DNF2Z398 122 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 GOLGA8TH3BQL2 631 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 SMAPO00193 183 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 CHUKO15111 745 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 FLRT2O43155 660 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 GRID2O43424 1007 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 VEGFDO43915 354 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 CBFA2T3O75081 653 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 VAPBO95292 243 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 MYF5P13349 255 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 MSH3P20585 1137 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 ACRV1P26436 265 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 AKT1P31749 480 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 GRK6P43250 576 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 ARCN1P48444 511 aaKnown RBP12.6□□□□□ -0.39
SS18-202ENST00000269138 PLTPP55058 493 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 ARL4CP56559 192 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 CTBSQ01459 385 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 GUCY2DQ02846 1103 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 HIF1AQ16665 826 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 DNAJC21Q5F1R6 531 aaKnown RBP12.6□□□□□ -0.39
SS18-202ENST00000269138 AFTPHQ6ULP2 937 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 ZDHHC24Q6UX98 284 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 DET1Q7L5Y6 550 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 TAF8Q7Z7C8 310 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 LDB1Q86U70 411 aaPredicted RBP12.6□□□□□ -0.39
SS18-202ENST00000269138 TMEM135Q86UB9 458 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 GALNT13Q8IUC8 556 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 ZNF547Q8IVP9 402 aa12.6□□□□□ -0.39
SS18-202ENST00000269138 SFTPA2Q8IWL1 248 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms