RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 FAM237BA0A1B0GVD1 139 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PER2O15055 1255 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 PGRP06401 933 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 ARHGEF5Q12774 1597 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 C1orf186Q6ZWK4 172 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 KIAA1683Q9H0B3 1180 aa11.32□□□□□ -0.6
PTPN4-201ENST00000263708 MAP3K4Q9Y6R4 1608 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 GRIN2DO15399 1336 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF726A6NNF4 738 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 IQCF5A8MTL0 148 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 GPR89AB7ZAQ6 455 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SMAD9O15198 467 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 TRAPPC6AO75865 159 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 GPR89BP0CG08 455 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ACVR2AP27037 513 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 C15orf59Q2T9L4 293 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 IDNKQ5T6J7 187 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 TMPRSS9Q7Z410 1059 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 AMIGO2Q86SJ2 522 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ACOT12Q8WYK0 555 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 PNPLA3Q9NST1 481 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 HIF3AQ9Y2N7 669 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 NEO1Q92859 1461 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF878C9JN71 531 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ADNP2Q6IQ32 1131 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SHQ1Q6PI26 577 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 UNC5BQ8IZJ1 945 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 LSM14AQ8ND56 463 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 OR4L1Q8NH43 312 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 PIGXQ8TBF5 258 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ATXN2LQ8WWM7 1075 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CLP1Q92989 425 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 LENG1Q96BZ8 264 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 STRA6Q9BX79 667 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 TCF7L1Q9HCS4 588 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 BCKDKO14874 412 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CHADO15335 359 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SSX5O60225 188 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SREBF1P36956 1147 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 OC90Q02509 493 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SDHAF4Q5VUM1 108 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SV2AQ7L0J3 742 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ISCA1Q9BUE6 129 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CLK4Q9HAZ1 481 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 AGO1Q9UL18 857 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ALPPL2P10696 532 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ATF6P18850 670 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 UQCRC1P31930 480 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 GRK6P43250 576 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ERVK-21P61565 698 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 Q4G0T1 1027 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 RFKQ969G6 155 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 DGCR14Q96DF8 476 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF700Q9H0M5 742 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 FAM205AQ6ZU69 1335 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 PDPK1O15530 556 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 OGNP20774 298 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 PSMA1P25786 263 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 RPL22P35268 128 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 HERVK_113P62684 666 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 IFI35P80217 286 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 MFSD3Q96ES6 412 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CLPTM1LQ96KA5 538 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 C15orf41Q9Y2V0 281 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 LRRC72A6NJI9 287 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 GLI1P08151 1106 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CMPK1P30085 196 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SLC7A1P30825 629 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 LIPMQ5VYY2 423 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 FAM35AQ86V20 835 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SYNPOQ8N3V7 929 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ZSWIM3Q96MP5 696 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 OR51V1Q9H2C8 321 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CCNB1IP1Q9NPC3 277 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SAR1AQ9NR31 198 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 PHPT1Q9NRX4 125 aaPredicted RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 NINJ2Q9NZG7 142 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SAMD9LQ8IVG5 1584 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ARCN1P48444 511 aaKnown RBP11.31□□□□□ -0.6
PTPN4-201ENST00000263708 FAM183BPQ6ZVS7 135 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CEP97Q8IW35 865 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CERS2Q96G23 380 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 MFSD14AQ96MC6 490 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 HEPHQ9BQS7 1158 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 KIF20BQ96Q89 1820 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 A0A0A0MRY4 1105 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SCAMP1O15126 338 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 TBX1O43435 398 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 CCNOP22674 350 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SULT2A1Q06520 285 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 C2orf80Q0P641 193 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 SPATA13Q96N96 652 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 FUT8Q9BYC5 575 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF69Q9UC07 566 aa11.31□□□□□ -0.6
PTPN4-201ENST00000263708 MYO9BQ13459 2157 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 PPIBP23284 216 aaKnown RBP11.3□□□□□ -0.6
PTPN4-201ENST00000263708 FOLH1Q04609 750 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 ST3GAL1Q11201 340 aa11.3□□□□□ -0.6
PTPN4-201ENST00000263708 AADACL4Q5VUY2 407 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms