RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RAI2Q9Y5P3 530 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 SEPT4O43236 478 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 NRP2O60462 931 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 UBXN7O94888 489 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 C22orf31O95567 290 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 RAB25P57735 213 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 CRTC3Q6UUV7 619 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 MPP5Q8N3R9 675 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 TRPM4Q8TD43 1214 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 HNRNPABQ99729 332 aaKnown RBP19.02■□□□□ 0.63
UPF1-201ENST00000262803 SLC25A51Q9H1U9 297 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 PHF11Q9UIL8 331 aa19.02■□□□□ 0.63
UPF1-201ENST00000262803 MPZL2O60487 215 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 C1RP00736 705 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 SLC26A3P40879 764 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 DUSP4Q13115 394 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 MOB2Q70IA6 237 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 KCTD15Q96SI1 283 aaPredicted RBP19.01■□□□□ 0.63
UPF1-201ENST00000262803 ING3Q9NXR8 418 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 LGALS13Q9UHV8 139 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 SNX7Q9UNH6 387 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 PSMD13Q9UNM6 376 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 E9PAM4 449 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 AHCYL1O43865 530 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 C8GP07360 202 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 ACLYP53396 1101 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 CCNYL2Q5T2Q4 361 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 ZNF540Q8NDQ6 660 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 FUBP3Q96I24 572 aaKnown RBP eCLIP19.01■□□□□ 0.63
UPF1-201ENST00000262803 ZNF514Q96K75 400 aaPredicted RBP19.01■□□□□ 0.63
UPF1-201ENST00000262803 CAMTA1Q9Y6Y1 1673 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 ARL2P36404 184 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 PDX1P52945 283 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 ZNF846Q147U1 533 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 TPGS2Q68CL5 300 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 GET4Q7L5D6 327 aaPredicted RBP19.01■□□□□ 0.63
UPF1-201ENST00000262803 HEPHQ9BQS7 1158 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 FAM83DQ9H4H8 585 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 HAT1O14929 419 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 FECHP22830 423 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 DDX6P26196 483 aaKnown RBP eCLIP19.01■□□□□ 0.63
UPF1-201ENST00000262803 AKT2P31751 481 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 RAB2AP61019 212 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 MBTD1Q05BQ5 628 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 C9orf64Q5T6V5 341 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 PSRC1Q6PGN9 363 aaPredicted RBP19.01■□□□□ 0.63
UPF1-201ENST00000262803 KCNS3Q9BQ31 491 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 LRTM1Q9HBL6 345 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 DMAC2Q9NW81 257 aa19.01■□□□□ 0.63
UPF1-201ENST00000262803 XKRYO14609 159 aa19■□□□□ 0.63
UPF1-201ENST00000262803 TM7SF2O76062 418 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CD48P09326 243 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CAP1Q01518 475 aa19■□□□□ 0.63
UPF1-201ENST00000262803 LPCAT4Q643R3 524 aa19■□□□□ 0.63
UPF1-201ENST00000262803 FUT10Q6P4F1 479 aa19■□□□□ 0.63
UPF1-201ENST00000262803 NATD1Q8N6N6 113 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CDADC1Q9BWV3 514 aa19■□□□□ 0.63
UPF1-201ENST00000262803 DUS2Q9NX74 493 aaKnown RBP19■□□□□ 0.63
UPF1-201ENST00000262803 PLK4O00444 970 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CHRNGP07510 517 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SLC35G6P0C7Q6 338 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CHRNB2P17787 502 aa19■□□□□ 0.63
UPF1-201ENST00000262803 PSMD8P48556 350 aa19■□□□□ 0.63
UPF1-201ENST00000262803 HADHBP55084 474 aaKnown RBP19■□□□□ 0.63
UPF1-201ENST00000262803 SEMA5AQ13591 1074 aa19■□□□□ 0.63
UPF1-201ENST00000262803 LDLRAP1Q5SW96 308 aa19■□□□□ 0.63
UPF1-201ENST00000262803 HECTD2Q5U5R9 776 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CCDC177Q9NQR7 707 aaPredicted RBP19■□□□□ 0.63
UPF1-201ENST00000262803 DNAAF2Q9NVR5 837 aaKnown RBP19■□□□□ 0.63
UPF1-201ENST00000262803 PADI3Q9ULW8 664 aa19■□□□□ 0.63
UPF1-201ENST00000262803 STK16O75716 305 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CDK14O94921 469 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CLDN9O95484 217 aa19■□□□□ 0.63
UPF1-201ENST00000262803 TOP3BO95985 862 aaKnown RBP19■□□□□ 0.63
UPF1-201ENST00000262803 TCF4P15884 667 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SMCO1Q147U7 214 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SF1Q15637 639 aaKnown RBP19■□□□□ 0.63
UPF1-201ENST00000262803 GK5Q6ZS86 529 aa19■□□□□ 0.63
UPF1-201ENST00000262803 ATCAYQ86WG3 371 aa19■□□□□ 0.63
UPF1-201ENST00000262803 HPS6Q86YV9 775 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SREK1IP1Q8N9Q2 155 aaPredicted RBP19■□□□□ 0.63
UPF1-201ENST00000262803 CHRAC1Q9NRG0 131 aa19■□□□□ 0.63
UPF1-201ENST00000262803 STX16-NPEPL1H3BU86 382 aa19■□□□□ 0.63
UPF1-201ENST00000262803 STX16O14662 325 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SERPINA1P01009 418 aa19■□□□□ 0.63
UPF1-201ENST00000262803 IL10RBQ08334 325 aa19■□□□□ 0.63
UPF1-201ENST00000262803 GCNT6Q5T4J0 391 aa19■□□□□ 0.63
UPF1-201ENST00000262803 MED27Q6P2C8 311 aa19■□□□□ 0.63
UPF1-201ENST00000262803 OTOP3Q7RTS5 596 aa19■□□□□ 0.63
UPF1-201ENST00000262803 CLPTM1LQ96KA5 538 aa19■□□□□ 0.63
UPF1-201ENST00000262803 C1QTNF1Q9BXJ1 281 aa19■□□□□ 0.63
UPF1-201ENST00000262803 SDCBP2Q9H190 292 aa19■□□□□ 0.63
UPF1-201ENST00000262803 S100A14Q9HCY8 104 aa19■□□□□ 0.63
UPF1-201ENST00000262803 RASSF1Q9NS23 344 aa19■□□□□ 0.63
UPF1-201ENST00000262803 COL20A1Q9P218 1284 aa19■□□□□ 0.63
UPF1-201ENST00000262803 ADSLP30566 484 aaPredicted RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 ROR2Q01974 943 aaKnown RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 GRSF1Q12849 480 aaKnown RBP eCLIP18.99■□□□□ 0.63
UPF1-201ENST00000262803 HIPK1Q86Z02 1210 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 CRISPLD1Q9H336 500 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms