RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NAPRTQ6XQN6 538 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 ATG14Q6ZNE5 492 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 SPATS2Q86XZ4 545 aaKnown RBP16.73■□□□□ 0.27
CLN3-252ENST00000636907 RBFAQ8N0V3 343 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 NAT14Q8WUY8 206 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 KCNJ9Q92806 393 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 GAS2L1Q99501 681 aaPredicted RBP16.73■□□□□ 0.27
CLN3-252ENST00000636907 SLC30A3Q99726 388 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 SYTL2Q9HCH5 934 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 THAP1Q9NVV9 213 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 ITM2BQ9Y287 266 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 ARL2BPQ9Y2Y0 163 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 PCDHB1Q9Y5F3 818 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 PRSS21Q9Y6M0 314 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 STON1Q9Y6Q2 735 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 BRWD1Q9NSI6 2320 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 IQCF5A8MTL0 148 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PLK4O00444 970 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 SPINT1O43278 529 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ZBTB14O43829 449 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 TGDSO95455 350 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PYGLP06737 847 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 RBP1P09455 135 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 TROVE2P10155 538 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-252ENST00000636907 HNRNPLP14866 589 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-252ENST00000636907 TFEBP19484 476 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 CHRM3P20309 590 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ARRB2P32121 409 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ETV3P41162 512 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 WASP42768 502 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PFKPQ01813 784 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 LIPMQ5VYY2 423 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ISCA2Q86U28 154 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 MMAAQ8IVH4 418 aaKnown RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 SIDT2Q8NBJ9 832 aaKnown RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 GIMAP7Q8NHV1 300 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 RFWD2Q8NHY2 731 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 C10orf82Q8WW14 230 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 SREK1Q8WXA9 508 aaKnown RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 EZH1Q92800 747 aaPredicted RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 TRIM55Q9BYV6 548 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 CLPBQ9H078 707 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ALG9Q9H6U8 611 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 TRMT6Q9UJA5 497 aaKnown RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 E5RI56 91 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 H3BMM5 538 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 K7EQS6 105 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 DCDC1P59894 354 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ENPP2Q13822 863 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 TXNDC11Q6PKC3 985 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 LIPIQ6XZB0 460 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 Q6ZVL8 140 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 CRLF3Q8IUI8 442 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ZNF513Q8N8E2 541 aaPredicted RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 CD200R1Q8TD46 325 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 SCAMP4Q969E2 229 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PTERQ96BW5 349 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PPP1R16AQ96I34 528 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 SORT1Q99523 831 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 GATA5Q9BWX5 397 aaPredicted RBP16.72■□□□□ 0.27
CLN3-252ENST00000636907 SPATA16Q9BXB7 569 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 FAM83DQ9H4H8 585 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 ZDHHC3Q9NYG2 299 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 GNPTGQ9UJJ9 305 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 DCTN4Q9UJW0 460 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 TMPRSS11EQ9UL52 423 aa16.72■□□□□ 0.27
CLN3-252ENST00000636907 PLXNB3Q9ULL4 1909 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 NEMP2A6NFY4 417 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 H2AFYO75367 372 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 ELFN1P0C7U0 828 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 GM2AP17900 193 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 KCNA5P22460 613 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 TNFRSF4P43489 277 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 KCNC1P48547 511 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 PSMD8P48556 350 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 CLCN7P51798 805 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 PRKAA2P54646 552 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 SEC13P55735 322 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 ABCE1P61221 599 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 PTRHD1Q6GMV3 140 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 FBXL19Q6PCT2 694 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 TECPR1Q7Z6L1 1165 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 DSG4Q86SJ6 1040 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 SUGP1Q8IWZ8 645 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 CHPFQ8IZ52 775 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 CLDN19Q8N6F1 224 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 TXNDC5Q8NBS9 432 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 ULK4Q96C45 1275 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 MOCOSQ96EN8 888 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 RMDN2Q96LZ7 410 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 DERL2Q9GZP9 239 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 ABCG8Q9H221 673 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 SARS2Q9NP81 518 aaKnown RBP16.71■□□□□ 0.27
CLN3-252ENST00000636907 ACSS2Q9NR19 701 aa16.71■□□□□ 0.27
CLN3-252ENST00000636907 COL4A2P08572 1712 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 PLXNA2O75051 1894 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 TRIOBPQ9H2D6 2365 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 C1QTNF3-AMACRE9PGA6 284 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 SPECC1L-ADORA2AF8WAN1 911 aa16.7■□□□□ 0.26
CLN3-252ENST00000636907 MBTPS2O43462 519 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms