RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PCMT1P22061 227 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 POU4F1Q01851 419 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CDH17Q12864 832 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PAFAH1B3Q15102 231 aaKnown RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 DPY19L1Q2PZI1 675 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 VPS26BQ4G0F5 336 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 AGAP9Q5VTM2 703 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 KCTD11Q693B1 232 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 NAPEPLDQ6IQ20 393 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PMF1Q6P1K2 205 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ZDHHC13Q8IUH4 622 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SCUBE3Q8IX30 993 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 EXOC8Q8IYI6 725 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC185Q8N715 623 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 Q8N9G6 341 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 HEXDCQ8WVB3 486 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 HTRA1Q92743 480 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TRIM63Q969Q1 353 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TMEM125Q96AQ2 219 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 DEFB118Q96PH6 123 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 KIFC1Q9BW19 673 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC177Q9NQR7 707 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 FAM49BQ9NUQ9 324 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PAK1IP1Q9NWT1 392 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TRHDEQ9UKU6 1024 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SYCE1LA8MT33 242 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 A8MT66 165 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 NCAM2O15394 837 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SOAT2O75908 522 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CCNKO75909 580 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SUPT7LO94864 414 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 INMTO95050 263 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ARIH2O95376 493 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TGFB3P10600 412 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SMPD1P17405 629 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 HTR1EP28566 365 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 MZF1P28698 734 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 GRIK1P39086 918 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 NKX2-5P52952 324 aaPredicted RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 GNG2P59768 71 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 LIPEQ05469 1076 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 IL18R1Q13478 541 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 CAPRIN1Q14444 709 aaKnown RBP10.76□□□□□ -0.69
UPF3A-212ENST00000619079 IMPG1Q17R60 797 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ADPRMQ3LIE5 342 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TBPL2Q6SJ96 375 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 FAM35AQ86V20 835 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 POC5Q8NA72 575 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 NDNFQ8TB73 568 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 SUN5Q8TC36 379 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 COPS5Q92905 334 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ARMC5Q96C12 935 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 LRCH3Q96II8 777 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 RNF145Q96MT1 663 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PGLYRP2Q96PD5 576 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ASB2Q96Q27 587 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 TMEM106CQ9BVX2 250 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ABCB10Q9NRK6 738 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 NRBP2Q9NSY0 501 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 FAM118AQ9NWS6 357 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF221Q9UK13 617 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PCDHB3Q9Y5E6 796 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 PCDHGA8Q9Y5G5 932 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 MCM3APO60318 1980 aa10.76□□□□□ -0.69
UPF3A-212ENST00000619079 H0Y626 953 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TRIM16O95361 564 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 NDST3O95803 873 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 IGHA2P01877 340 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 ALDOCP09972 364 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 IMPDH1P20839 514 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 UBA1P22314 1058 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PTPN3P26045 913 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 NMBRP28336 390 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SLC13A2Q13183 592 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 OLIG2Q13516 323 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 NFYCQ13952 458 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 MXD4Q14582 209 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 RPS6KA2Q15349 733 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TECRLQ5HYJ1 363 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SIGIRRQ6IA17 410 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TLK2Q86UE8 772 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 STK32CQ86UX6 486 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CDR2LQ86X02 465 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CEP97Q8IW35 865 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SMG8Q8ND04 991 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 OR6J1Q8NGC5 347 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 RNF139Q8WU17 664 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF566Q969W8 418 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TP53INP1Q96A56 240 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 BIRC7Q96CA5 298 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CLIP3Q96DZ5 547 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 EMILIN2Q9BXX0 1053 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 AP5M1Q9H0R1 490 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TOR3AQ9H497 397 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SDR39U1Q9NRG7 319 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 MAGEL2Q9UJ55 1249 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 MKI67P46013 3256 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SPATA31C2B4DYI2 1134 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SLC1A7O00341 560 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms