RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GAD2Q05329 585 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CYP4F3Q08477 520 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PTP4A2Q12974 167 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PLCL1Q15111 1095 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 Q3ZCU0 254 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 TMPRSS9Q7Z410 1059 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PPIL6Q8IXY8 311 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 OR4M1Q8NGD0 313 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 DYNC2LI1Q8TCX1 351 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 RAET1EQ8TD07 263 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ZNF606Q8WXB4 792 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 DEDD2Q8WXF8 326 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ACO2Q99798 780 aaKnown RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 BDH2Q9BUT1 245 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 DGCR6LQ9BY27 220 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 MRPL4Q9BYD3 311 aaKnown RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 IFT46Q9NQC8 304 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 POLR3BQ9NW08 1133 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 ADA2Q9NZK5 511 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CCDC59Q9P031 241 aaKnown RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 CYB5R1Q9UHQ9 305 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 FARP1Q9Y4F1 1045 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 TCRBV9S1A1TA0A576 114 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 B4GAT1O43505 415 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PPM1BO75688 479 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 FGF3P11487 239 aaPredicted RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 ERP29P30040 261 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 NUMBP49757 651 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TEKQ02763 1124 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 GEN1Q17RS7 908 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ADPRMQ3LIE5 342 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PARP15Q460N3 678 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 NXNL2Q5VZ03 156 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 DRICH1Q6PGQ1 229 aaPredicted RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 BRAT1Q6PJG6 821 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 XKRXQ6PP77 449 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 USP51Q70EK9 711 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CREB3L2Q70SY1 520 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 KRT77Q7Z794 578 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 FAM124AQ86V42 546 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ZBTB8OSQ8IWT0 167 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PHC2Q8IXK0 858 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 GLB1L3Q8NCI6 653 aaPredicted RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 ZBTB44Q8NCP5 570 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ENKURQ8TC29 256 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ST8SIA2Q92186 375 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 MUL1Q969V5 352 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 VTI1AQ96AJ9 217 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CNDP1Q96KN2 507 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TEKT5Q96M29 485 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PHOX2BQ99453 314 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 SYT17Q9BSW7 474 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PCDHAC1Q9H158 963 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 SPON1Q9HCB6 807 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ZFP14Q9HCL3 533 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TAS2R9Q9NYW1 312 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 GPRC5BQ9NZH0 403 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 KIF17Q9P2E2 1029 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PCOLCE2Q9UKZ9 415 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TMPRSS11EQ9UL52 423 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 AKT3Q9Y243 479 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 STYXL1Q9Y6J8 313 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 NRCAMQ92823 1304 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 A0A087WZ62 844 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 BTN3A1O00481 513 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TRDMT1O14717 391 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 SSX5O60225 188 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 AXLP30530 894 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ADCYAP1R1P41586 468 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 SSTP61278 116 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 VBP1P61758 197 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 NOMO3P69849 1222 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CSTF3Q12996 717 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 SKIV2LQ15477 1246 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 FCRLBQ6BAA4 426 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TXNRD3NBQ6F5E7 133 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 EPGNQ6UW88 154 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 MON1BQ7L1V2 547 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CATSPER4Q7RTX7 472 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 EPHX4Q8IUS5 362 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CCDC36Q8IYA8 594 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 ABRAQ8N0Z2 381 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 KLHL6Q8WZ60 621 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TFAP2BQ92481 460 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 TBATAQ96M53 351 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 MCEEQ96PE7 176 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 SORT1Q99523 831 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 FDXACB1Q9BRP7 624 aaPredicted RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 REXO4Q9GZR2 422 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 TOR3AQ9H497 397 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 PCDH9Q9HC56 1237 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 CISHQ9NSE2 258 aa10.17□□□□□ -0.78
VPS39-214ENST00000614932 DRG1Q9Y295 367 aaKnown RBP10.17□□□□□ -0.78
VPS39-214ENST00000614932 WDR90Q96KV7 1748 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 F8VP50 259 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 AP3D1O14617 1153 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ST8SIA5O15466 376 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 ALBP02768 609 aa10.16□□□□□ -0.78
VPS39-214ENST00000614932 SERPINE1P05121 402 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms