RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CXCL12P48061 93 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 BMPR2Q13873 1038 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 SEMA3AQ14563 771 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 LRRC14Q15048 493 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 DBN1Q16643 649 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 ATP13A5Q4VNC0 1218 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 TAF1BQ53T94 588 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 PTRHD1Q6GMV3 140 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 MAMSTRQ6ZN01 415 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 RFLNAQ6ZTI6 216 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 RAPH1Q70E73 1250 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 FAM124AQ86V42 546 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 LCA5Q86VQ0 697 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 FAM76AQ8TAV0 307 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 MZB1Q8WU39 189 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 LPGAT1Q92604 370 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 SCAMP4Q969E2 229 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 ATXN7L3BQ96GX2 97 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 TSSK1BQ9BXA7 367 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 C1QTNF2Q9BXJ5 285 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 SLC17A9Q9BYT1 436 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 ZCCHC2Q9C0B9 1178 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 IQCGQ9H095 443 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 NKIRAS1Q9NYS0 192 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 TAS2R13Q9NYV9 303 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 USP36Q9P275 1121 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 SERGEFQ9UGK8 458 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 GNPTGQ9UJJ9 305 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 ANKRD6Q9Y2G4 727 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 HMX2A2RU54 273 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 FAM47DPA6NHR8 397 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 QSOX1O00391 747 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 DCXO43602 365 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 VPS26AO75436 327 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 RFPL1O75677 317 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 SLC25A14O95258 325 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 PYGBP11216 843 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 COL6A2P12110 1019 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 PKMP14618 531 aaKnown RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 NR1D1P20393 614 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 MSH3P20585 1137 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 SAT1P21673 171 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 RPS3P23396 243 aaKnown RBP eCLIP15.12■□□□□ 0.011e-8■□□□□ 9.8
TRIM28-209ENST00000597423 TEAD1P28347 426 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 HPDP32754 393 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 NUDT1P36639 197 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 CDKN1CP49918 316 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 CCR3P51677 355 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 SLC18A1P54219 525 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 RAB10P61026 200 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 PPP2R2AP63151 447 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 SLC18A2Q05940 514 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 HECTD2Q5U5R9 776 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 RAET1GQ6H3X3 334 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 ANO7Q6IWH7 933 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 GLYATL1Q969I3 302 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 ISL2Q96A47 359 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 AARSD1Q9BTE6 412 aaKnown RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 POPDC3Q9HBV1 291 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 CD320Q9NPF0 282 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 COQ6Q9Y2Z9 468 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 ACOT9Q9Y305 439 aa15.12■□□□□ 0.01
TRIM28-209ENST00000597423 SPTBN5Q9NRC6 3674 aaKnown RBP15.12■□□□□ 0.01
TRIM28-209ENST00000597423 CKAP5Q14008 2032 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 A0A087X1B8 175 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 A0A096LPK6 155 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 E5RI56 91 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 COPEO14579 308 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 TPP1O14773 563 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 PRPF4O43172 522 aaKnown RBP eCLIP15.11■□□□□ 0.01
TRIM28-209ENST00000597423 RHOBTB1O94844 696 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 AP2A2O94973 939 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 GSTA1P08263 222 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 OR56A5P0C7T3 313 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 PRSS56P0CW18 603 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 CHRM3P20309 590 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 CD9P21926 228 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 AKT1P31749 480 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SLC26A3P40879 764 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 GAS6Q14393 721 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 GPRC6AQ5T6X5 926 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 PNCKQ6P2M8 343 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 MACC1Q6ZN28 852 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 TRIM69Q86WT6 500 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 PHYKPLQ8IUZ5 450 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SLC41A1Q8IVJ1 513 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SERAC1Q96JX3 654 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 HHIPQ96QV1 700 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SELENOSQ9BQE4 189 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 VPS11Q9H270 941 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SYTL2Q9HCH5 934 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 SNX15Q9NRS6 342 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 EBF1Q9UH73 591 aa15.11■□□□□ 0.01
TRIM28-209ENST00000597423 PRR23AA6NEV1 266 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 GOLGA8RI6L899 631 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 KPNA5O15131 536 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 ZWINTO95229 277 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 SEMA4FO95754 770 aa15.1■□□□□ 0.01
TRIM28-209ENST00000597423 PAK4O96013 591 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-209ENST00000597423 ATP1B2P14415 290 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms