RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 WNT3AP56704 352 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 CXADRP78310 365 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 CFHR1Q03591 330 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 CLN3Q13286 438 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 AADACL2Q6P093 401 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 BZW1Q7L1Q6 419 aaKnown RBP12.92□□□□□ -0.34
LIG1-212ENST00000596549 TMTC1Q8IUR5 882 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 RCOR2Q8IZ40 523 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 SFRP1Q8N474 314 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 TTC30BQ8N4P2 665 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 TRAM1L1Q8N609 369 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 LRRC57Q8N9N7 239 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 HTR3CQ8WXA8 447 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 MRGPRX2Q96LB1 330 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 FCRL5Q96RD9 977 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 ZSCAN5AQ9BUG6 496 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 SPATA16Q9BXB7 569 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 HEMGNQ9BXL5 484 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 STRADBQ9C0K7 418 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 CARD9Q9H257 536 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 CPNE5Q9HCH3 593 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 LUC7LQ9NQ29 371 aaKnown RBP12.92□□□□□ -0.34
LIG1-212ENST00000596549 TMEM9Q9P0T7 183 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 KLHL8Q9P2G9 620 aaPredicted RBP12.92□□□□□ -0.34
LIG1-212ENST00000596549 TBC1D29Q9UFV1 150 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 PISDQ9UG56 409 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 FAM153AQ9UHL3 310 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 TMPRSS11EQ9UL52 423 aa12.92□□□□□ -0.34
LIG1-212ENST00000596549 IGHV1OR21-1A0A087WYE8 117 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 GRID2IPA4D2P6 1211 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 HACD1B0YJ81 288 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 GPR39O43194 453 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 MTSS1O43312 755 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 MTX2O75431 263 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 CTNNA2P26232 953 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 RBL1P28749 1068 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 ALDH4A1P30038 563 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 CA5AP35218 305 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 GPR3P46089 330 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 VAV2P52735 878 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 TMPRSS3P57727 454 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 OTUD4Q01804 1114 aaKnown RBP12.91□□□□□ -0.34
LIG1-212ENST00000596549 PLA2G4EQ3MJ16 856 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 AMZ1Q400G9 498 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 SIRPB2Q5JXA9 342 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.91□□□□□ -0.34
LIG1-212ENST00000596549 PHF19Q5T6S3 580 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 NKAIN2Q5VXU1 208 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 PCSK4Q6UW60 755 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 ADGRG6Q86SQ4 1221 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 RCBTB1Q8NDN9 531 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 ALG3Q92685 438 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 GLYATL1Q969I3 302 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 CCDC74BQ96LY2 380 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 GPR63Q9BZJ6 419 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 RMI1Q9H9A7 625 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 BPIFA1Q9NP55 256 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 FOXJ2Q9P0K8 574 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 TRIM10Q9UDY6 481 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 ZNHIT2Q9UHR6 403 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 ACSL6Q9UKU0 697 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIG1-212ENST00000596549 PCDHGA7Q9Y5G6 932 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 PCDHA3Q9Y5H8 950 aa12.91□□□□□ -0.34
LIG1-212ENST00000596549 IGHV5-10-1A0A0J9YXX1 117 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PRR19A6NJB7 356 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 CHUKO15111 745 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 GRID2O43424 1007 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 SLC25A14O95258 325 aaPredicted RBP12.9□□□□□ -0.34
LIG1-212ENST00000596549 JMJD7P0C870 316 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 THRAP10827 490 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 SLC5A2P31639 672 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PTPN7P35236 360 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 SRSF6Q13247 344 aaKnown RBP12.9□□□□□ -0.34
LIG1-212ENST00000596549 XRCC4Q13426 336 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PEX6Q13608 980 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 COL9A2Q14055 689 aaPredicted RBP12.9□□□□□ -0.34
LIG1-212ENST00000596549 PDPK2PQ6A1A2 396 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 CRTC3Q6UUV7 619 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 USP53Q70EK8 1073 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PID1Q7Z2X4 250 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 GPR155Q7Z3F1 870 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PHYKPLQ8IUZ5 450 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 ZNF547Q8IVP9 402 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 SLC25A41Q8N5S1 370 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 IPMKQ8NFU5 416 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 ACTL9Q8TC94 416 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PMEPA1Q969W9 287 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 PLEKHG4BQ96PX9 1271 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 VPS35Q96QK1 796 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 UBL7Q96S82 380 aaPredicted RBP12.9□□□□□ -0.34
LIG1-212ENST00000596549 VAT1Q99536 393 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 FAM118BQ9BPY3 351 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 DPH1Q9BZG8 443 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 OR2AG1Q9H205 316 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 GBA3Q9H227 469 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 RSPH14Q9UHP6 348 aa12.9□□□□□ -0.34
LIG1-212ENST00000596549 TRBV23OR9-2A0A075B6M9 112 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 PRAMEF33A0A0G2JMD5 474 aa12.89□□□□□ -0.35
LIG1-212ENST00000596549 MACROD2A1Z1Q3 448 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms