RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PLEKHG4BQ96PX9 1271 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 GTSE1Q9NYZ3 720 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 CRLS1Q9UJA2 301 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 ATG2AQ2TAZ0 1938 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 AGAP14A8MT82 685 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 B2RBV5 119 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 STX16-NPEPL1H3BU86 382 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 STX16O14662 325 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 BNIP3LO60238 219 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NIPSNAP2O75323 286 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 WFS1O76024 890 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 SUPT7LO94864 414 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NFATC1O95644 943 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 UGT2B4P06133 528 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 CYP2A6P11509 494 aaPredicted RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 GFAPP14136 432 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 EZRP15311 586 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 ZNF30P17039 623 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 ACRV1P26436 265 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 KCNC1P48547 511 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NRIP1P48552 1158 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 EML3Q32P44 896 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 TMC5Q6UXY8 1006 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 SUGP1Q8IWZ8 645 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 PTGR2Q8N8N7 351 aaPredicted RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 MAPK15Q8TD08 544 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 BPIFB1Q8TDL5 484 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 SMARCD2Q92925 531 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 MCUR1Q96AQ8 359 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 ULK4Q96C45 1275 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 MRGPRX3Q96LB0 322 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 GSTO2Q9H4Y5 243 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 BRD9Q9H8M2 597 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 RAD18Q9NS91 495 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 TAS2R1Q9NYW7 299 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 GDE1Q9NZC3 331 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 C2orf16Q68DN1 1984 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 TSPAN11A1L157 253 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 GSC2O15499 205 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 ATP6V1G2O95670 118 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 CISD3P0C7P0 127 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 MTHFD2P13995 350 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 FSHRP23945 695 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 CCR10P46092 362 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 RGS4P49798 205 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 CLCN7P51798 805 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 ST8SIA6P61647 398 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 UBAP2LQ14157 1087 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 GEN1Q17RS7 908 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 LRRC66Q68CR7 880 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 TMEM215Q68D42 235 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 MACC1Q6ZN28 852 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 CUZD1Q86UP6 607 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NXPE1Q8N323 547 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 FBXO39Q8N4B4 442 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NAT16Q8N8M0 369 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 SIDT2Q8NBJ9 832 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 FRS2Q8WU20 508 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 UTP4Q969X6 686 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 PBXIP1Q96AQ6 731 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 LINGO1Q96FE5 620 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 MAELQ96JY0 434 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 ASB16Q96NS5 453 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 NUF2Q9BZD4 464 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 PKD2L2Q9NZM6 624 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 KLHL42Q9P2K6 505 aa14.07□□□□□ -0.16
LIG3-205ENST00000585941 YBX2Q9Y2T7 364 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 LAMA2P24043 3122 aaKnown RBP14.07□□□□□ -0.16
LIG3-205ENST00000585941 A0A0U1RQS6 177 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 SUPT3HB4E1H0 165 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 UBXN8O00124 270 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 BTN3A1O00481 513 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 KLK8O60259 260 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 SUPT3HO75486 399 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 TSPAN12O95859 305 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 HNRNPLP14866 589 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIG3-205ENST00000585941 KDSRQ06136 332 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 KCNC3Q14003 757 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 ARHGEF7Q14155 803 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 ZRSR2Q15696 482 aaKnown RBP14.06□□□□□ -0.16
LIG3-205ENST00000585941 RAB30Q15771 203 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 CHRNA6Q15825 494 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 UNC50Q53HI1 259 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 WASHC2DQ5SRD0 308 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 RINLQ6ZS11 566 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 ADAMTSL2Q86TH1 951 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 TSPAN33Q86UF1 283 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 NPAS3Q8IXF0 933 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 CPSF7Q8N684 471 aaKnown RBP14.06□□□□□ -0.16
LIG3-205ENST00000585941 C12orf76Q8N812 135 aaPredicted RBP14.06□□□□□ -0.16
LIG3-205ENST00000585941 CEP70Q8NHQ1 597 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 MAGEC3Q8TD91 643 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 DTX3LQ8TDB6 740 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 FUBP1Q96AE4 644 aaKnown RBP14.06□□□□□ -0.16
LIG3-205ENST00000585941 FAM136AQ96C01 138 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 MOCOSQ96EN8 888 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 KLHL32Q96NJ5 620 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 OR52B2Q96RD2 323 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 C1QTNF3Q9BXJ4 246 aa14.06□□□□□ -0.16
LIG3-205ENST00000585941 CADM1Q9BY67 442 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms