RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FRMD1Q8N878 549 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 OR56A3Q8NH54 315 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 ZCCHC10Q8TBK6 192 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 ST8SIA2Q92186 375 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 ZNF75CPQ92670 426 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 DHX58Q96C10 678 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 C11orf54Q9H0W9 315 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 ST6GALNAC4Q9H4F1 302 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 NCOR1P1Q9H4R4 102 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 TMEM206Q9H813 350 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 UBE2ZQ9H832 354 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 MRPL17Q9NRX2 175 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 PANK4Q9NVE7 773 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 MID2Q9UJV3 735 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 PCDHA7Q9UN72 937 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 POMT1Q9Y6A1 747 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 SLC30A1Q9Y6M5 507 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 MYO10Q9HD67 2058 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 MTCL1Q9Y4B5 1905 aaKnown RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 UNC80Q8N2C7 3258 aa6.2□□□□□ -1.42
VPS53-212ENST00000572259 COL4A4P53420 1690 aaPredicted RBP6.2□□□□□ -1.42
VPS53-212ENST00000572259 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 RNF103-CHMP3A0A140T963 221 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 MYMKA6NI61 221 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 GLOD5A6NK44 160 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 LIPT2A6NK58 231 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 EFCAB8A8MWE9 144 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 K7EPI3 171 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RNF103O00237 685 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CACNB4O00305 520 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 KIAA0391O15091 583 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 GPR42O15529 346 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PJA2O43164 708 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 HNRNPRO43390 633 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 PROM1O43490 865 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 DDHD2O94830 711 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 GCNT3O95395 438 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 URODP06132 367 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CTSAP10619 480 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PECAM1P16284 738 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 CDH2P19022 906 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 BTF3P20290 206 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 HOXA5P20719 270 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 SERPINA4P29622 427 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PPARGP37231 505 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 NRIP1P48552 1158 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 SLC11A1P49279 550 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CLRN1P58418 232 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 OSTNP61366 133 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 GTF2BQ00403 316 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 DSC1Q08554 894 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PKP1Q13835 747 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RPS6KA2Q15349 733 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 NFIL3Q16649 462 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 USP41Q3LFD5 358 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 LEXMQ3ZCV2 418 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RAB41Q5JT25 222 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 GLRA4Q5JXX5 417 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PLPP4Q5VZY2 271 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RESP18Q5W5W9 173 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RAP1GAP2Q684P5 730 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 DOK3Q7L591 496 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 SYT13Q7L8C5 426 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ZNF720Q7Z2F6 126 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RBM23Q86U06 439 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 DNAAF5Q86Y56 855 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ZNF280BQ86YH2 543 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PLXDC1Q8IUK5 500 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CD302Q8IX05 232 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RHOT2Q8IXI1 618 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ELOA2Q8IYF1 753 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 GPR65Q8IYL9 337 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 MRPL43Q8N983 215 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 ZFP28Q8NHY6 868 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CEP76Q8TAP6 659 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 SLC35B2Q8TB61 432 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 SETD6Q8TBK2 473 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 STAMQ92783 540 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CASP10Q92851 521 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 GSDMAQ96QA5 445 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ACCSQ96QU6 501 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 NR1H4Q96RI1 486 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 MSTO1Q9BUK6 570 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 CDT1Q9H211 546 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 KCNH6Q9H252 994 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 VPS16Q9H269 839 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 RPF1Q9H9Y2 349 aaKnown RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 OLFML3Q9NRN5 406 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS53-212ENST00000572259 GIMAP4Q9NUV9 329 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ANKFY1Q9P2R3 1169 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 DNAJB4Q9UDY4 337 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 ZDHHC8Q9ULC8 765 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 BTBD3Q9Y2F9 522 aa6.19□□□□□ -1.42
VPS53-212ENST00000572259 PRG3Q9Y2Y8 225 aaPredicted RBP6.19□□□□□ -1.42
VPS53-212ENST00000572259 A0A0B4J203 849 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 TRAV34A0A0B4J273 112 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 PVALEFA0A1B0GWK0 134 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 ARHGEF37A1IGU5 675 aa6.18□□□□□ -1.42
VPS53-212ENST00000572259 CAPN14A8MX76 684 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms