RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CATSPERBQ9H7T0 1116 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 VPS18Q9P253 973 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 APEX2Q9UBZ4 518 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 KCNK6Q9Y257 313 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 SLC30A1Q9Y6M5 507 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 SEC16AO15027 2179 aa17.81■□□□□ 0.44
CLK3-227ENST00000570296 HTRA2O43464 458 aaPredicted RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 SNX2O60749 519 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 PALMO75781 387 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 SNRPB2P08579 225 aaKnown RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 CD1EP15812 388 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 SDC4P31431 198 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 ACY1Q03154 408 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 PAK1Q13153 545 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 ZNF630Q2M218 657 aaPredicted RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 C15orf59Q2T9L4 293 aaPredicted RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 TMCO4Q5TGY1 634 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 STRADAQ7RTN6 431 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 TECPR1Q7Z6L1 1165 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 CUZD1Q86UP6 607 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 ZADH2Q8N4Q0 377 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 EMC1Q8N766 993 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 SIDT2Q8NBJ9 832 aaKnown RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 MSANTD4Q8NCY6 345 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 AP2M1Q96CW1 435 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 DHTKD1Q96HY7 919 aaPredicted RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 COX14Q96I36 57 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 SLC41A2Q96JW4 573 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 CINPQ9BW66 212 aaPredicted RBP17.8■□□□□ 0.44
CLK3-227ENST00000570296 PDCL3Q9H2J4 239 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 LRRC19Q9H756 370 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 SEMA5BQ9P283 1151 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 EPHA6Q9UF33 1036 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 TCFL5Q9UL49 500 aa17.8■□□□□ 0.44
CLK3-227ENST00000570296 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 ZNF202O95125 648 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 FOLR1P15328 257 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 XRCC1P18887 633 aaPredicted RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 HTR1EP28566 365 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 PNOCQ13519 176 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 STIM1Q13586 685 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 ATP1A4Q13733 1029 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 KYNUQ16719 465 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 CCDC14Q49A88 953 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 NLRP8Q86W28 1048 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 ZNF295-AS1Q8N0V1 137 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 ZBTB2Q8N680 514 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 ENDOVQ8N8Q3 282 aaKnown RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 ITLN2Q8WWU7 325 aaPredicted RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 RELTQ969Z4 430 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 LRFN5Q96NI6 719 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 PLEKHG4BQ96PX9 1271 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 NLNQ9BYT8 704 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 CHST8Q9H2A9 424 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 METTL5Q9NRN9 209 aaKnown RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 PRKAB1Q9Y478 270 aa17.79■□□□□ 0.44
CLK3-227ENST00000570296 PCYT1BQ9Y5K3 369 aaPredicted RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 MAP1AP78559 2803 aaPredicted RBP17.79■□□□□ 0.44
CLK3-227ENST00000570296 FGF10O15520 208 aaPredicted RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 PRICKLE3O43900 615 aaPredicted RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 SOCS5O75159 536 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 IPO13O94829 963 aaKnown RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 ASMTLO95671 621 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 GNA14O95837 355 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 CPP00450 1065 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 VIPP01282 170 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 KLK3P07288 261 aaPredicted RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 ACP5P13686 325 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 PTPN9P43378 593 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 SCNN1BP51168 640 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 GSDMDP57764 484 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 BPIFB4P59827 614 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 GPS2Q13227 327 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 MYBPC3Q14896 1274 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 LLGL1Q15334 1064 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 C2CD6Q53TS8 623 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 VWA2Q5GFL6 755 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 FAM92BQ6ZTR7 304 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 ZNF765Q7L2R6 523 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 PHYKPLQ8IUZ5 450 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 UBXN4Q92575 508 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 CENPIQ92674 756 aaPredicted RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 NSMCE3Q96MG7 304 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 CRACR2AQ9BSW2 395 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 SCAND2PQ9GZW5 306 aaPredicted RBP17.78■□□□□ 0.44
CLK3-227ENST00000570296 RAB33BQ9H082 229 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 ABCG8Q9H221 673 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 RMI1Q9H9A7 625 aa17.78■□□□□ 0.44
CLK3-227ENST00000570296 NPIPB15A6NHN6 443 aaPredicted RBP17.77■□□□□ 0.44
CLK3-227ENST00000570296 FAM155BO75949 473 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 LSM8O95777 96 aaKnown RBP17.77■□□□□ 0.44
CLK3-227ENST00000570296 CLCNKAP51800 687 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 RFTN1Q14699 578 aaPredicted RBP17.77■□□□□ 0.44
CLK3-227ENST00000570296 HGSNATQ68CP4 663 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 TTI2Q6NXR4 508 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 SLFN11Q7Z7L1 901 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 PARP9Q8IXQ6 854 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 PYROXD2Q8N2H3 581 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 EXD1Q8NHP7 514 aa17.77■□□□□ 0.44
CLK3-227ENST00000570296 GRHL3Q8TE85 626 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms