RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PLEKHG4BQ96PX9 1271 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 PSKH2Q96QS6 385 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 RANBP9Q96S59 729 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 GPATCH2LQ9NWQ4 482 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 SLC30A1Q9Y6M5 507 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 ITPR3Q14573 2671 aa15.98■□□□□ 0.15
CLK3-223ENST00000568488 SETD2Q9BYW2 2564 aaPredicted RBP15.97■□□□□ 0.15
CLK3-223ENST00000568488 F8P00451 2351 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 DNAJC6O75061 913 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 CEACAM4O75871 244 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 VIPP01282 170 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 ITGA1P56199 1179 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 PDE1BQ01064 536 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 RAPSNQ13702 412 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 ZNF235Q14590 738 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 LRRC66Q68CR7 880 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 PWWP2BQ6NUJ5 590 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 CYB5D1Q6P9G0 228 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 TMEM26Q6ZUK4 368 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 USP45Q70EL2 814 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 HPS6Q86YV9 775 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 AVL9Q8NBF6 648 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 SPOCK2Q92563 424 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 COX14Q96I36 57 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 RIOK2Q9BVS4 552 aaKnown RBP15.97■□□□□ 0.15
CLK3-223ENST00000568488 NOD2Q9HC29 1040 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 RARRES3Q9UL19 164 aa15.97■□□□□ 0.15
CLK3-223ENST00000568488 F5H423 210 aaPredicted RBP15.96■□□□□ 0.15
CLK3-223ENST00000568488 EEF2KO00418 725 aaKnown RBP15.96■□□□□ 0.15
CLK3-223ENST00000568488 TMEM63AO94886 807 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 CYP1A1P04798 512 aaPredicted RBP15.96■□□□□ 0.15
CLK3-223ENST00000568488 PYGLP06737 847 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 UBE2IP63279 158 aaKnown RBP15.96■□□□□ 0.15
CLK3-223ENST00000568488 TRAF2Q12933 501 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 TUBB3Q13509 450 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 ARMC12Q5T9G4 340 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 KLHDC7AQ5VTJ3 777 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 DPY19L2P1Q6NXN4 242 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 IRGCQ6NXR0 463 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 PHYKPLQ8IUZ5 450 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 ARHGAP12Q8IWW6 846 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 MR1Q95460 341 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 SMIM14Q96QK8 99 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 OSGEPL1Q9H4B0 414 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 RUBCNLQ9H714 662 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 GPR83Q9NYM4 423 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 ADAM22Q9P0K1 906 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 ITGB1BP2Q9UKP3 347 aa15.96■□□□□ 0.15
CLK3-223ENST00000568488 ADGRG4Q8IZF6 3080 aa15.96■□□□□ 0.14
CLK3-223ENST00000568488 SSU72P8A0A1W2PR75 194 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 ANKRD62A6NC57 917 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 PGLSO95336 258 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 LPOP22079 712 aaPredicted RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 HTR7P34969 479 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 AIF1P55008 147 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 CDR2Q01850 454 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 PTSQ03393 145 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 ZNF677Q86XU0 584 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 ELOA2Q8IYF1 753 aaPredicted RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 NDUFAF2Q8N183 169 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 SIDT2Q8NBJ9 832 aaKnown RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 KLHL6Q8WZ60 621 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 ZDHHC12Q96GR4 267 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 MCCC1Q96RQ3 725 aaPredicted RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 NUDCD1Q96RS6 583 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 DHX35Q9H5Z1 703 aaKnown RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 UCK1Q9HA47 277 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 SCHIP1Q9P0W5 487 aaPredicted RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 VPS18Q9P253 973 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 RWDD2AQ9UIY3 292 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 COPG1Q9Y678 874 aaKnown RBP15.95■□□□□ 0.14
CLK3-223ENST00000568488 AKAP9Q99996 3911 aa15.95■□□□□ 0.14
CLK3-223ENST00000568488 SIGLEC16A6NMB1 481 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 PES1O00541 588 aaKnown RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 LRRTM2O43300 516 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 GRID2O43424 1007 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 GFPT2O94808 682 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 FOLR1P15328 257 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 CHRNB2P17787 502 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 ERCC2P18074 760 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 NELFEP18615 380 aaKnown RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 HNRNPH3P31942 346 aaKnown RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 ZNF143P52747 638 aaPredicted RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 MAXP61244 160 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 FMO1Q01740 532 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 PTP4A2Q12974 167 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 KCNAB1Q14722 419 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 MAN2A1Q16706 1144 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 KYNUQ16719 465 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 TPD52L1Q16890 204 aaPredicted RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 ZXDCQ2QGD7 858 aaPredicted RBP15.94■□□□□ 0.14
CLK3-223ENST00000568488 ZNF765Q7L2R6 523 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 PRSS42Q7Z5A4 293 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 NLRP8Q86W28 1048 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 RSC1A1Q92681 617 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 STK33Q9BYT3 514 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 VPS16Q9H269 839 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 NDST4Q9H3R1 872 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 RMI1Q9H9A7 625 aa15.94■□□□□ 0.14
CLK3-223ENST00000568488 KLC4Q9NSK0 619 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms