RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MAGEC1O60732 1142 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 BANF1O75531 89 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 STK10O94804 968 aaKnown RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 RASGRP1O95267 797 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 IVLP07476 585 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 FTH1P19P0C7X4 201 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CEACAM1P13688 526 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 TCP1P17987 556 aaKnown RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 ARNTP27540 789 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 FDFT1P37268 417 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 SPAM1P38567 509 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 ADCY8P40145 1251 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 GRK6P43250 576 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 GNPDA1P46926 289 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 ARRB1P49407 418 aaPredicted RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 SIM1P81133 766 aaPredicted RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 CTBSQ01459 385 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 PRPSAP1Q14558 356 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 PERM1Q5SV97 790 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CES3Q6UWW8 571 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 KLHL7Q8IXQ5 586 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 RAVER1Q8IY67 606 aaKnown RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 NDUFAF2Q8N183 169 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 RASGEF1AQ8N9B8 481 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 NAT8LQ8N9F0 302 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 OR4C6Q8NH72 309 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 ATL2Q8NHH9 583 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 GPBAR1Q8TDU6 330 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 BTN2A2Q8WVV5 523 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 GLYATL1Q969I3 302 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 SKA1Q96BD8 255 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 HIC2Q96JB3 615 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CNDP2Q96KP4 475 aaKnown RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 TRIM51Q9BSJ1 452 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 BOCQ9BWV1 1114 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 SPATA16Q9BXB7 569 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CARS2Q9HA77 564 aaKnown RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 SAR1BQ9Y6B6 198 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 PRSS21Q9Y6M0 314 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CELSR3Q9NYQ7 3312 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 CCDC162PA2VCL2 907 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 CTAGE9A4FU28 777 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 A6NCN8 305 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 LMO7DNF2Z398 122 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 CACNB4O00305 520 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 CHUKO15111 745 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 NUAK1O60285 661 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 APRTP07741 180 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TPSB2P20231 275 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 LPOP22079 712 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 MGAT1P26572 445 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 NMBRP28336 390 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 PMLP29590 882 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 FOXN2P32314 431 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 HNRNPKP61978 463 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS35-206ENST00000565228 BASP1P80723 227 aaKnown RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 C2orf54Q08AI8 447 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 GPS1Q13098 491 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 COL9A2Q14055 689 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 PTK2BQ14289 1009 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TRADDQ15628 312 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TPSAB1Q15661 275 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 SMAD1Q15797 465 aaKnown RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 ZNF658BQ4V348 819 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 MSS51Q4VC12 460 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 GPRC6AQ5T6X5 926 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 GUSBP11Q6P575 273 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 FAM83HQ6ZRV2 1179 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 C17orf82Q86X59 251 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 OXR1Q8N573 874 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 LILRA3Q8N6C8 439 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 BEND7Q8N7W2 519 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 CCDC89Q8N998 374 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 KYQ8NBH2 561 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 CCHCR1Q8TD31 782 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 MAIP1Q8WWC4 291 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 CDKN2AIPNLQ96HQ2 116 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TBATAQ96M53 351 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 FCRL3Q96P31 734 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 PLEKHG4BQ96PX9 1271 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 OR2AG1Q9H205 316 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TRABDQ9H4I3 376 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 EIF2B3Q9NR50 452 aaKnown RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 CHRAC1Q9NRG0 131 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 PHPT1Q9NRX4 125 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 HAUS2Q9NVX0 235 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 NLE1Q9NVX2 485 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 SYBUQ9NX95 663 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 NLGN3Q9NZ94 848 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 SCHIP1Q9P0W5 487 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 SIRPGQ9P1W8 387 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 MARCH4Q9P2E8 410 aaPredicted RBP9.12□□□□□ -0.95
VPS35-206ENST00000565228 SPASTQ9UBP0 616 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 PCYOX1Q9UHG3 505 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 MOSPD1Q9UJG1 213 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 CSNK1G3Q9Y6M4 447 aa9.12□□□□□ -0.95
VPS35-206ENST00000565228 TRBV5-4A0A0C4DH59 114 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 GLYATL1P3A0A0U1RQE8 302 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 GOLGA8MH3BSY2 632 aa9.11□□□□□ -0.95
VPS35-206ENST00000565228 H7C0S8 307 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms