RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 STX7O15400 261 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 ZSCAN12O43309 604 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 NUDT21O43809 227 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 VEGFDO43915 354 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 CRTAMO95727 393 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 FUCA1P04066 466 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ATP1A1P05023 1023 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 LPOP22079 712 aaPredicted RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 MSNP26038 577 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 ADRA1AP35348 466 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 SPAM1P38567 509 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ACTR1BP42025 376 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ACTR1AP61163 376 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 BIRC2Q13490 618 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ITGA9Q13797 1035 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 TAF1AQ15573 450 aaPredicted RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 COL28A1Q2UY09 1125 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 CDCP2Q5VXM1 449 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 MARK2Q7KZI7 788 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 NRROSQ86YC3 692 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 KLHDC8BQ8IXV7 354 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 TTC30BQ8N4P2 665 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 CCL4L1Q8NHW4 92 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 BRSK1Q8TDC3 778 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ZDHHC1Q8WTX9 485 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 COL26A1Q96A83 441 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 C19orf43Q9BQ61 176 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 TBL1YQ9BQ87 522 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 CCDC3Q9BQI4 270 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 TMEM121Q9BTD3 319 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 LRRC40Q9H9A6 602 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ARNT2Q9HBZ2 717 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 BPIFA1Q9NP55 256 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 DKK4Q9UBT3 224 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ZNF148Q9UQR1 794 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 ZKSCAN5Q9Y2L8 839 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 PIKFYVEQ9Y2I7 2098 aa13.27□□□□□ -0.29
CLK3-216ENST00000564468 URB1O60287 2271 aaKnown RBP13.27□□□□□ -0.29
CLK3-216ENST00000564468 TCRBV7S2A1N4TA0A589 114 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 GRID2O43424 1007 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 LIASO43766 372 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 NUAK1O60285 661 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 NOBOXO60393 691 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 DNAJC6O75061 913 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 SLC2A4P14672 509 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 AK4P27144 223 aaPredicted RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 GTF2H3Q13889 308 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 SPIDRQ14159 915 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 CCNG2Q16589 344 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 PERM1Q5SV97 790 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 CERCAMQ5T4B2 595 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 RBM44Q6ZP01 1051 aaKnown RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 CHST15Q7LFX5 561 aaPredicted RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 LINC00523Q86TU6 105 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 CCDC74AQ96AQ1 378 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 RTP4Q96DX8 246 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 TTC25Q96NG3 672 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 GORASP1Q9BQQ3 440 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 HELZ2Q9BYK8 2649 aaKnown RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 ZCCHC2Q9C0B9 1178 aaKnown RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 HOMER3Q9NSC5 361 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 SPATS2LQ9NUQ6 558 aaKnown RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 LRIT1Q9P2V4 623 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 ATXN10Q9UBB4 475 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 APPL1Q9UKG1 709 aa13.26□□□□□ -0.29
CLK3-216ENST00000564468 OAS3Q9Y6K5 1087 aaKnown RBP13.26□□□□□ -0.29
CLK3-216ENST00000564468 GLYATL1P3A0A0U1RQE8 302 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 ERI2A8K979 691 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 RHPN2P1A8MT19 583 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 TMX2-CTNND1H3BSU7 103 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 KMOO15229 486 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 FDFT1P37268 417 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 HADHAP40939 763 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 CLDN6P56747 220 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 HLTFQ14527 1009 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLK3-216ENST00000564468 OASLQ15646 514 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 LDLRAP1Q5SW96 308 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 C4orf22Q6V702 233 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 C17orf82Q86X59 251 aaPredicted RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 GDAP1Q8TB36 358 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 PTCD2Q8WV60 388 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 HNRNPLLQ8WVV9 542 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 ATG4AQ8WYN0 398 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 GFM1Q96RP9 751 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 APOL2Q9BQE5 337 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 TLR10Q9BXR5 811 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 OR2AG1Q9H205 316 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 STN1Q9H668 368 aaKnown RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 SYNDIG1Q9H7V2 258 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 IL26Q9NPH9 171 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 JRKLQ9Y4A0 524 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 AK5Q9Y6K8 562 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 APC2O95996 2303 aa13.25□□□□□ -0.29
CLK3-216ENST00000564468 COL27A1Q8IZC6 1860 aaPredicted RBP13.25□□□□□ -0.29
CLK3-216ENST00000564468 OR5K4A6NMS3 321 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 NTN3O00634 580 aaPredicted RBP13.24□□□□□ -0.29
CLK3-216ENST00000564468 CSO75390 466 aaKnown RBP13.24□□□□□ -0.29
CLK3-216ENST00000564468 CDK14O94921 469 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms