RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ABCC11Q96J66 1382 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 ERBINQ96RT1 1412 aa5.12□□□□□ -1.59
VPS35-205ENST00000563984 A0A088AWK7 358 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 LOC390937A0A1W2PQ73 354 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CENPBD1B2RD01 187 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 VWC2LB2RUY7 222 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 H0YAE9 185 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 UBE2CO00762 179 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 XPO1O14980 1071 aaKnown RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 CLDN3O15551 220 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 AP1G1O43747 822 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 GMFGO60234 142 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MGRN1O60291 552 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 EXOC3O60645 756 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CYTIPO60759 359 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 GMNNO75496 209 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 FYNP06241 537 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 STAG3L3P0CL85 134 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PIM1P11309 404 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 CKMT1AP12532 417 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ITGA2P17301 1181 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 HOXB8P17481 243 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 CCNA2P20248 432 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MAT2AP31153 395 aaKnown RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 TLX1P31314 330 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 NNMTP40261 264 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MAGEA4P43358 317 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KCNJ5P48544 419 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 LMAN1P49257 510 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 LUMP51884 338 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 RAP1GDS1P52306 607 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 P2RX3P56373 397 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 SOX8P57073 446 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 SRP54P61011 504 aaKnown RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 ARHGAP8P85298 464 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 LMAN2Q12907 356 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 RPA4Q13156 261 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PPIL2Q13356 520 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KCNAB1Q14722 419 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PON2Q15165 354 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KRT31Q15323 416 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 SF3B4Q15427 424 aaKnown RBP eCLIP5.11□□□□□ -1.59
VPS35-205ENST00000563984 CHRNA6Q15825 494 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KHDC1LQ5JSQ8 128 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CACHD1Q5VU97 1274 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 NAA35Q5VZE5 725 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PGBD2Q6P3X8 592 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 BZW1Q7L1Q6 419 aaKnown RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 DSG4Q86SJ6 1040 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MAP7D3Q8IWC1 876 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MB21D2Q8IYB1 491 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 FAM133AQ8N9E0 248 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 FAM156AQ8NDB6 213 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 FAM46DQ8NEK8 389 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MCPH1Q8NEM0 835 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ZNF671Q8TAW3 534 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 SLC35G2Q8TBE7 412 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 HEXDCQ8WVB3 486 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 UBLCP1Q8WVY7 318 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 STAMQ92783 540 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ZNF566Q969W8 418 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 RILPL2Q969X0 211 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KIAA1191Q96A73 305 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ZUFSPQ96AP4 578 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ZNF274Q96GC6 653 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 ERO1AQ96HE7 468 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MAGED4Q96JG8 741 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 NSMCE2Q96MF7 247 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 OLFM3Q96PB7 478 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PRAM1Q96QH2 718 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CYTH2Q99418 400 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 NDNQ99608 321 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 WACQ9BTA9 647 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 MOV10L1Q9BXT6 1211 aaKnown RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 FUT8Q9BYC5 575 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ACTRT3Q9BYD9 372 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 HSD3B7Q9H2F3 369 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 TMEM206Q9H813 350 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PNPLA8Q9NP80 782 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CNNM1Q9NRU3 951 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 AGPAT5Q9NUQ2 364 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ASB6Q9NWX5 421 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 RAB20Q9NX57 234 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ARPP21Q9UBL0 812 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 KCNN3Q9UGI6 736 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ITGA11Q9UKX5 1188 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PACSIN2Q9UNF0 486 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 MAGED2Q9UNF1 606 aaPredicted RBP5.11□□□□□ -1.59
VPS35-205ENST00000563984 CAMK2AQ9UQM7 478 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 DNAJC16Q9Y2G8 782 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PLEKHM1Q9Y4G2 1056 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CYP46A1Q9Y6A2 500 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 PIAS3Q9Y6X2 628 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 FAM169AQ9Y6X4 670 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 USP19O94966 1318 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 KIF24Q5T7B8 1368 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 CNTLNQ9NXG0 1405 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 ARHGEF11O15085 1522 aa5.11□□□□□ -1.59
VPS35-205ENST00000563984 A0A1B0GTQ1 180 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 SERTM2A0A1B0GWG4 89 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms