RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMEM121Q9BTD3 319 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 LRRC40Q9H9A6 602 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ARNT2Q9HBZ2 717 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 BPIFA1Q9NP55 256 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 DKK4Q9UBT3 224 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ZNF148Q9UQR1 794 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ZKSCAN5Q9Y2L8 839 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 PIKFYVEQ9Y2I7 2098 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 URB1O60287 2271 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 TCRBV7S2A1N4TA0A589 114 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 GRID2O43424 1007 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 LIASO43766 372 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 NUAK1O60285 661 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 NOBOXO60393 691 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 DNAJC6O75061 913 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 SLC2A4P14672 509 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 AK4P27144 223 aaPredicted RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 GTF2H3Q13889 308 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 SPIDRQ14159 915 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 CCNG2Q16589 344 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 PERM1Q5SV97 790 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 CERCAMQ5T4B2 595 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 RBM44Q6ZP01 1051 aaKnown RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 CHST15Q7LFX5 561 aaPredicted RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 LINC00523Q86TU6 105 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 CCDC74AQ96AQ1 378 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 RTP4Q96DX8 246 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 TTC25Q96NG3 672 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 GORASP1Q9BQQ3 440 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 ZCCHC2Q9C0B9 1178 aaKnown RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 HOMER3Q9NSC5 361 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 SPATS2LQ9NUQ6 558 aaKnown RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 LRIT1Q9P2V4 623 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 ATXN10Q9UBB4 475 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 APPL1Q9UKG1 709 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 OAS3Q9Y6K5 1087 aaKnown RBP13.26□□□□□ -0.29
CLK3-213ENST00000563842 SPEGQ15772 3267 aa13.26□□□□□ -0.29
CLK3-213ENST00000563842 GLYATL1P3A0A0U1RQE8 302 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 ERI2A8K979 691 aaKnown RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 RHPN2P1A8MT19 583 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 TMX2-CTNND1H3BSU7 103 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 KMOO15229 486 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 FDFT1P37268 417 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 HADHAP40939 763 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 CLDN6P56747 220 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 HLTFQ14527 1009 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLK3-213ENST00000563842 OASLQ15646 514 aaKnown RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 LDLRAP1Q5SW96 308 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 C4orf22Q6V702 233 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 C17orf82Q86X59 251 aaPredicted RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 GDAP1Q8TB36 358 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 PTCD2Q8WV60 388 aaKnown RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 ATG4AQ8WYN0 398 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 GFM1Q96RP9 751 aaKnown RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 APOL2Q9BQE5 337 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 TLR10Q9BXR5 811 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 OR2AG1Q9H205 316 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 STN1Q9H668 368 aaKnown RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 SYNDIG1Q9H7V2 258 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 IL26Q9NPH9 171 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 JRKLQ9Y4A0 524 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 AK5Q9Y6K8 562 aa13.25□□□□□ -0.29
CLK3-213ENST00000563842 COL27A1Q8IZC6 1860 aaPredicted RBP13.25□□□□□ -0.29
CLK3-213ENST00000563842 APC2O95996 2303 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 OR5K4A6NMS3 321 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 NTN3O00634 580 aaPredicted RBP13.24□□□□□ -0.29
CLK3-213ENST00000563842 CSO75390 466 aaKnown RBP13.24□□□□□ -0.29
CLK3-213ENST00000563842 CDK14O94921 469 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 METTL18O95568 372 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 GAS8O95995 478 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 IFNB1P01574 187 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 ZNF8P17098 575 aaPredicted RBP13.24□□□□□ -0.29
CLK3-213ENST00000563842 VCLP18206 1134 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 GPR3P46089 330 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 CLCNKAP51800 687 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 GDF10P55107 478 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 RTP5Q14D33 572 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 ISXQ2M1V0 245 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 ATP13A5Q4VNC0 1218 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 KCTD11Q693B1 232 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 DRICH1Q6PGQ1 229 aaPredicted RBP13.24□□□□□ -0.29
CLK3-213ENST00000563842 ADGRG6Q86SQ4 1221 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 LRRTM4Q86VH4 590 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 MARCH9Q86YJ5 346 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 CCNJLQ8IV13 435 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 LSMEM2Q8N112 164 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 CCDC89Q8N998 374 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 AVL9Q8NBF6 648 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 OR4K2Q8NGD2 314 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 C1orf54Q8WWF1 131 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 LRRN3Q9H3W5 708 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 PAK5Q9P286 719 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 ZMIZ1Q9ULJ6 1067 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 DRG1Q9Y295 367 aaKnown RBP13.24□□□□□ -0.29
CLK3-213ENST00000563842 ARL5AQ9Y689 179 aa13.24□□□□□ -0.29
CLK3-213ENST00000563842 E7EVH7 732 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CHUKO15111 745 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 CEP104O60308 925 aa13.23□□□□□ -0.29
CLK3-213ENST00000563842 KCNJ13O60928 360 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms