RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MOCS1Q9NZB8 636 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 IL37Q9NZH6 218 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ZNF221Q9UK13 617 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 NUDT5Q9UKK9 219 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 VWA7Q9Y334 891 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 H0Y858 1186 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 SHMT2P34897 504 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 HADHAP40939 763 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 HIST2H2ACQ16777 129 aaPredicted RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 FAM214AQ32MH5 1076 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 SPATC1Q76KD6 591 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 R3HCC1LQ7Z5L2 792 aaKnown RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 SPPL2CQ8IUH8 684 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 CCDC185Q8N715 623 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 FAM149B1Q96BN6 582 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 ZFYVE19Q96K21 471 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 DACH2Q96NX9 599 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 DEFB118Q96PH6 123 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 GAD1Q99259 594 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 ZNF670Q9BS34 389 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 YTHDF1Q9BYJ9 559 aaKnown RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 DNAI2Q9GZS0 605 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 CCM2LQ9NUG4 571 aaPredicted RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 ZDHHC2Q9UIJ5 367 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 A8MV72 311 aaPredicted RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 ZW10O43264 779 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 BEST1O76090 585 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 TGM2P21980 687 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 CYP2F1P24903 491 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 OXTRP30559 389 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 RPL34P49207 117 aaKnown RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 MGAT3Q09327 533 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 ZIK1Q3SY52 487 aaPredicted RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 STEAP3Q658P3 488 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 REP15Q6BDI9 236 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 ADCK1Q86TW2 530 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 CELF2-AS1Q8N7Q2 184 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 OR6F1Q8NGZ6 308 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 RMDN1Q96DB5 314 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 BTN2A3PQ96KV6 586 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 HSFY1Q96LI6 401 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 DMRTB1Q96MA1 342 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 SNX18Q96RF0 628 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 C12orf10Q9HB07 376 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 MRPL40Q9NQ50 206 aaKnown RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 PIH1D1Q9NWS0 290 aaKnown RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 STMN3Q9NZ72 180 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 CAB39Q9Y376 341 aaPredicted RBP13.23□□□□□ -0.29
CLK3-206ENST00000562078 PTPRDP23468 1912 aa13.23□□□□□ -0.29
CLK3-206ENST00000562078 WDR27A2RRH5 827 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 B8ZZF3 427 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 M0R3G1 203 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 TBX1O43435 398 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 TRIM13O60858 407 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 DAB1O75553 588 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 UPK1BO75841 260 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 INMTO95050 263 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 PIGNO95427 931 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 IL7RP16871 459 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 NAGAP17050 411 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 GSTM2P28161 218 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 RBL1P28749 1068 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 SCNN1AP37088 669 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 EIF2DP41214 584 aaKnown RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 RPS9P46781 194 aaKnown RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 SLC7A2P52569 658 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 SELPLGQ14242 412 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 DPYSL2Q16555 572 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 DPY19L1Q2PZI1 675 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 ADPRMQ3LIE5 342 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 ARL13AQ5H913 290 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 SPRED1Q7Z699 444 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 GALNT12Q8IXK2 581 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 SLC22A15Q8IZD6 547 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 TP53I13Q8NBR0 393 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 OR7A2PQ8NGA2 310 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CENPIQ92674 756 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 RNF208Q9H0X6 261 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 PAK5Q9P286 719 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 BAG5Q9UL15 447 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 NUP205Q92621 2012 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 DHRS12A0PJE2 317 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 TMEM233B4DJY2 109 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 GPR182O15218 404 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 HTR1AP08908 422 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 NPR3P17342 541 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CTRB1P17538 263 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 M6PRP20645 277 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 FASP25445 335 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CYP2C18P33260 490 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 IRF9Q00978 393 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 POU6F1Q14863 301 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 INSCQ1MX18 579 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 KIAA0319Q5VV43 1072 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CTRB2Q6GPI1 263 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 CASC4Q6P4E1 433 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 FAM131BQ86XD5 332 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 HMGCLL1Q8TB92 370 aa13.22□□□□□ -0.29
CLK3-206ENST00000562078 JPH3Q8WXH2 748 aaPredicted RBP13.22□□□□□ -0.29
CLK3-206ENST00000562078 PEX13Q92968 403 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms