RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF449Q6P9G9 518 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 DOK6Q6PKX4 331 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LRRC69Q6ZNQ3 347 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 KDELC2Q7Z4H8 507 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TSPAN33Q86UF1 283 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TMEM139Q8IV31 216 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ZNF567Q8N184 647 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 CBARPQ8N350 705 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 CEP112Q8N8E3 955 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 CCDC89Q8N998 374 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 KDF1Q8NAX2 398 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 GDAP1Q8TB36 358 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 VOPP1Q96AW1 172 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 MIEF2Q96C03 454 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 HES6Q96HZ4 224 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ZNF514Q96K75 400 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 CABS1Q96KC9 395 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TMEM74Q96NL1 305 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 HERPUD2Q9BSE4 406 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 CARD6Q9BX69 1037 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 PARD6BQ9BYG5 372 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 CEP41Q9BYV8 373 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 FRMD8Q9BZ67 464 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 SYNDIG1Q9H7V2 258 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LRRC40Q9H9A6 602 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 FGF22Q9HCT0 170 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 DKK4Q9UBT3 224 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ZNHIT2Q9UHR6 403 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 APPL1Q9UKG1 709 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 REXO2Q9Y3B8 237 aaKnown RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 DUSP10Q9Y6W6 482 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LOC285095A0A1B0GVY8 99 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 RCCD1A6NED2 376 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TMEM202A6NGA9 273 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 CFAP99D6REC4 459 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 NUDT21O43809 227 aaKnown RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 SHOX2O60902 331 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 PRLP01236 227 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 SLC4A1P02730 911 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 RBL1P28749 1068 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 RBMS1P29558 406 aaKnown RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 SPAM1P38567 509 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 MARCKSL1P49006 195 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 WASHC5Q12768 1159 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 C14orf28Q4W4Y0 310 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ANKRD20A2Q5SQ80 823 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LDLRAP1Q5SW96 308 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ANKRD20A1Q5TYW2 823 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ANKRD20A3Q5VUR7 823 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 LYSMD3Q7Z3D4 306 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TMC3Q7Z5M5 1100 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 DCBLD1Q8N8Z6 715 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 PLA2G15Q8NCC3 412 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 GPBAR1Q8TDU6 330 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 OR1E3Q8WZA6 343 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.6□□□□□ -1.032e-7■■■■□ 19.6
USP3-208ENST00000558285 TADA1Q96BN2 335 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 ULK4Q96C45 1275 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 PDXPQ96GD0 296 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 GFM1Q96RP9 751 aaKnown RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 EPB41L1Q9H4G0 881 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 VPS37BQ9H9H4 285 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TRIM39Q9HCM9 518 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 TOR4AQ9NXH8 423 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 SIRPGQ9P1W8 387 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 SAE1Q9UBE0 346 aaPredicted RBP8.6□□□□□ -1.03
USP3-208ENST00000558285 CD84Q9UIB8 345 aa8.6□□□□□ -1.03
USP3-208ENST00000558285 SPTBN2O15020 2390 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 VPS13AQ96RL7 3174 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 KNL1Q8NG31 2342 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 B4DGG1 531 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 EBAG9O00559 213 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 GCATO75600 419 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 MT-CYBP00156 380 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 CEACAM5P06731 702 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 MMP2P08253 660 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 LPOP22079 712 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 PPARGP37231 505 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 FDFT1P37268 417 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 ACTR1BP42025 376 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 GPR3P46089 330 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 ACTR1AP61163 376 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 LLGL1Q15334 1064 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 TAF1AQ15573 450 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 SLC1A5Q15758 541 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 BEND6Q5SZJ8 279 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 HENMT1Q5T8I9 393 aaKnown RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 ARL14Q8N4G2 192 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 SLC25A41Q8N5S1 370 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 BEND7Q8N7W2 519 aaPredicted RBP8.59□□□□□ -1.03
USP3-208ENST00000558285 SPATA22Q8NHS9 363 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 RNF217Q8TC41 542 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 MAGEC3Q8TD91 643 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 BLOC1S5Q8TDH9 187 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 ZDHHC1Q8WTX9 485 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 GATA6Q92908 595 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 GLYATL1Q969I3 302 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 ITFG2Q969R8 447 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 DCUN1D1Q96GG9 259 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms