RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MAVSQ7Z434 540 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 KIAA0907Q7Z7F0 614 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 PARP9Q8IXQ6 854 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 RBFAQ8N0V3 343 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ARHGAP24Q8N264 748 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 WFIKKN2Q8TEU8 576 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 MYLIPQ8WY64 445 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 L3HYPDHQ96EM0 354 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 SCRN2Q96FV2 425 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 MSLNLQ96KJ4 702 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ASB2Q96Q27 587 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 BTBD10Q9BSF8 475 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 CLPBQ9H078 707 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 CD207Q9UJ71 328 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 TMCO1Q9UM00 188 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 STK38LQ9Y2H1 464 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PPIL1Q9Y3C6 166 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 GYG2O15488 501 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 MGRN1O60291 552 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 KERAO60938 352 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 ASLP04424 464 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 CYP17A1P05093 508 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 KRT16P08779 473 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 ADH5P11766 374 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 KCNA5P22460 613 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 FCARP24071 287 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 GKP32189 559 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 TUBB3Q13509 450 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 FAM151BQ6UXP7 276 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 ATG14Q6ZNE5 492 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 ADIPOR2Q86V24 386 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 AGR3Q8TD06 166 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 KIAA1191Q96A73 305 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 GPR21Q99679 349 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 CCDC106Q9BWC9 280 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 CYP4F12Q9HCS2 524 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 TCF7L2Q9NQB0 619 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 MRGBPQ9NV56 204 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 ERVW-1Q9UQF0 538 aa16.72■□□□□ 0.27
LDLR-206ENST00000557958 GLYATL1P3A0A0U1RQE8 302 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 WASH3PC4AMC7 463 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 SPECC1L-ADORA2AF8WAN1 911 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 CLDN7O95471 211 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 CHRM3P20309 590 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 RPS3P23396 243 aaKnown RBP eCLIP16.71■□□□□ 0.276e-10■□□□□ 10.3
LDLR-206ENST00000557958 CDKN1CP49918 316 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 IL2P60568 153 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 HERVK_113P63132 956 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 NFATC2Q13469 925 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 RIPK1Q13546 671 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 BRAT1Q6PJG6 821 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 PAQR3Q6TCH7 311 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 DPY19L3Q6ZPD9 716 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 FRMD7Q6ZUT3 714 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 GRIN3AQ8TCU5 1115 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 FGF14Q92915 247 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 PHF21BQ96EK2 531 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 RPP25Q9BUL9 199 aaKnown RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 TBC1D10AQ9BXI6 508 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 ERVK-6Q9BXR3 956 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 ASB8Q9H765 288 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 GTSE1Q9NYZ3 720 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 GNPTGQ9UJJ9 305 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 RNF112Q9ULX5 631 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 CDYLQ9Y232 598 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 TRIOBPQ9H2D6 2365 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 EYSQ5T1H1 3165 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 NEMP2A6NFY4 417 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 NFATC1O95644 943 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 ENO1P06733 434 aaKnown RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 EZRP15311 586 aaKnown RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 NCF2P19878 526 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 POU3F3P20264 500 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 DGKGP49619 791 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 VASPP50552 380 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 PTPRRQ15256 657 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 PREPLQ4J6C6 727 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 SH2D4BQ5SQS7 431 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 Q6ZVU0 165 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 LSMEM2Q8N112 164 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 SMRP1Q8NCR6 262 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 MCUR1Q96AQ8 359 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 PTERQ96BW5 349 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 EID2BQ96D98 161 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 PRR11Q96HE9 360 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 MCCC1Q96RQ3 725 aaPredicted RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 GEMIN8Q9NWZ8 242 aaKnown RBP16.71■□□□□ 0.27
LDLR-206ENST00000557958 ZDHHC2Q9UIJ5 367 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 CRLS1Q9UJA2 301 aa16.71■□□□□ 0.27
LDLR-206ENST00000557958 GOLGA8QA0A0J9YX86 632 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 GOLGA8OA6NCC3 632 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 OTOL1A6NHN0 477 aaPredicted RBP16.7■□□□□ 0.26
LDLR-206ENST00000557958 GOLGA8NF8WBI6 632 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 HOXC11O43248 304 aaPredicted RBP16.7■□□□□ 0.26
LDLR-206ENST00000557958 OR1I1O60431 355 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 UGT2B4P06133 528 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 GFAPP14136 432 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 CDKN3Q16667 212 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 CTSL3PQ5NE16 218 aa16.7■□□□□ 0.26
LDLR-206ENST00000557958 VWA5B1Q5TIE3 1220 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms