RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 KHDC1Q4VXA5 237 aaKnown RBP13.58□□□□□ -0.24
SHMT2-219ENST00000555563 CERCAMQ5T4B2 595 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ZDHHC20Q5W0Z9 365 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 REXO1L1PQ8IX06 675 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ZDHHC1Q8WTX9 485 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 PATE1Q8WXA2 126 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 PDLIM2Q96JY6 352 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 VPS35Q96QK1 796 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 OR2AG1Q9H205 316 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 SYNDIG1Q9H7V2 258 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 LRRC40Q9H9A6 602 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 RMI1Q9H9A7 625 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ARNT2Q9HBZ2 717 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ZNHIT2Q9UHR6 403 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ZNF148Q9UQR1 794 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 KCTD3Q9Y597 815 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 RNF215Q9Y6U7 377 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 ASPMQ8IZT6 3477 aa13.58□□□□□ -0.24
SHMT2-219ENST00000555563 CACNA1GO43497 2377 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 GLYATL1P3A0A0U1RQE8 302 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 TRABD2BA6NFA1 517 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 STX7O15400 261 aaKnown RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 GRID2O43424 1007 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CEP104O60308 925 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 AP2A1O95782 977 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ACP5P13686 325 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 GLB1P16278 677 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 LPOP22079 712 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 STIP1P31948 543 aaKnown RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CA5AP35218 305 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ZNF140P52738 457 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CHRNA6Q15825 494 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CRTC3Q6UUV7 619 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CHST15Q7LFX5 561 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ADGRG6Q86SQ4 1221 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 PRUNE1Q86TP1 453 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 C17orf82Q86X59 251 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 NAGSQ8N159 534 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 CACTIN-AS1Q8N1I8 211 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 PDCD7Q8N8D1 485 aaKnown RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 GLIS1Q8NBF1 620 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 MDM1Q8TC05 714 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ANP32BQ92688 251 aaKnown RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 LRRC45Q96CN5 670 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 DEPDC7Q96QD5 511 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 TRIM39Q9HCM9 518 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.57□□□□□ -0.241e-9■■□□□ 11.4
SHMT2-219ENST00000555563 KCNK6Q9Y257 313 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 PCDHB1Q9Y5F3 818 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ZFC3H1O60293 1989 aaKnown RBP13.57□□□□□ -0.24
SHMT2-219ENST00000555563 ASXL3Q9C0F0 2248 aa13.57□□□□□ -0.24
SHMT2-219ENST00000555563 RP1P56715 2156 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 ARHGEF17Q96PE2 2063 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 C2orf81A6NN90 581 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 GPR89AB7ZAQ6 455 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CHUKO15111 745 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 ZSCAN12O43309 604 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 NUDT21O43809 227 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 PPFIA2O75334 1257 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CSO75390 466 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 PRAMEF1O95521 474 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 ECEL1O95672 775 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CRTAMO95727 393 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CAPNS1P04632 268 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 RPLP0P05388 317 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 GPR89BP0CG08 455 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 ETS1P14921 441 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 PDX1P52945 283 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 COL9A2Q14055 689 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CCNG2Q16589 344 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 PLA2G4EQ3MJ16 856 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 RBM44Q6ZP01 1051 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CCNJLQ8IV13 435 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CCDC89Q8N998 374 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 OR4K2Q8NGD2 314 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 OR6C4Q8NGE1 309 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 DTX3LQ8TDB6 740 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 BRSK1Q8TDC3 778 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 NXPE2Q96DL1 559 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CCDC86Q9H6F5 360 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 SMOXQ9NWM0 555 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 PIH1D1Q9NWS0 290 aaKnown RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 LRIT1Q9P2V4 623 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 FEZ2Q9UHY8 353 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-219ENST00000555563 FKBPLQ9UIM3 349 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 JRKLQ9Y4A0 524 aa13.56□□□□□ -0.24
SHMT2-219ENST00000555563 CCL22O00626 93 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 NTN3O00634 580 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-219ENST00000555563 VEGFDO43915 354 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A9O60656 530 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 TCEA3O75764 348 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 EML2O95834 649 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ZSCAN5DPP0CG00 497 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A6P19224 532 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A1P22309 533 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A4P22310 534 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A3P35503 534 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A5P35504 534 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ACTN2P35609 894 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 CCL7P80098 99 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms