RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CCDC181Q5TID7 509 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 PHYKPLQ8IUZ5 450 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 SLITRK4Q8IW52 837 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 SFTPA2Q8IWL1 248 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 SFRP1Q8N474 314 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ARL14Q8N4G2 192 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 TTC13Q8NBP0 860 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNF248Q8NDW4 579 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 GLYATL1Q969I3 302 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 GORASP1Q9BQQ3 440 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 STRADBQ9C0K7 418 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 RSPH14Q9UHP6 348 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ACSL6Q9UKU0 697 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ZFC3H1O60293 1989 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 PRR19A6NJB7 356 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 DDX3YO15523 660 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 STK10O94804 968 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 ATP1A1P05023 1023 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 RBP3P10745 1247 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 ABCG1P45844 678 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 MAZP56270 477 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 EIF3EP60228 445 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 RANBP10Q6VN20 620 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 KDELC2Q7Z4H8 507 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 B3GNT8Q7Z7M8 397 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 AVL9Q8NBF6 648 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 HES6Q96HZ4 224 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 SPATA13Q96N96 652 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 DPYSL5Q9BPU6 564 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 SPATA16Q9BXB7 569 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 FSD1LQ9BXM9 530 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 TSGA10Q9BZW7 698 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 UBP1Q9NZI7 540 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 IL17CQ9P0M4 197 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 ATXN10Q9UBB4 475 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 SSUH2Q9Y2M2 353 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 AAR2Q9Y312 384 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 PCDHGA7Q9Y5G6 932 aa15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 PCYT1BQ9Y5K3 369 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-209ENST00000554872 MACROD2A1Z1Q3 448 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 RHPN2P1A8MT19 583 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 PLD2O14939 933 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 AURKAO14965 403 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 CASC3O15234 703 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 GRID2O43424 1007 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 B4GAT1O43505 415 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC25A14O95258 325 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ASMTLO95671 621 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 CPNE6O95741 557 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC2A4P14672 509 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ADRA1AP35348 466 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 GPLD1P80108 840 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 COL28A1Q2UY09 1125 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 C3orf38Q5JPI3 329 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ANKRD20A2Q5SQ80 823 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 FAM182AQ5T1J6 154 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ANKRD20A1Q5TYW2 823 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ANKRD20A3Q5VUR7 823 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 LRRC69Q6ZNQ3 347 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNF662Q6ZS27 426 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 MARK2Q7KZI7 788 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ADGRG6Q86SQ4 1221 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 SPC24Q8NBT2 197 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 CCDC112Q8NEF3 446 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 IPMKQ8NFU5 416 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 DESI2Q9BSY9 194 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 B3GNT4Q9C0J1 378 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 SARS2Q9NP81 518 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 SMOXQ9NWM0 555 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 TRIM10Q9UDY6 481 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNHIT2Q9UHR6 403 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 FEZ2Q9UHY8 353 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 PLEKHM1Q9Y4G2 1056 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 LOC400499M0QZD8 3231 aa15.87■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNF106Q9H2Y7 1883 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 KIR2DS5A0A0G2JLQ3 304 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 A0A0G2JNG1 304 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 GOLGA6L9A6NEM1 432 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 C5orf60A6NFR6 353 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 OR5K4A6NMS3 321 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 KIR2DS3K7RE56 304 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 ARHGAP6O43182 974 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 ZNF8P17098 575 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 RBMS1P29558 406 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 CHRNA4P43681 627 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 KIR2DS5Q14953 304 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 ALS2CLQ60I27 953 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 SLC37A2Q8TED4 501 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 CCDC97Q96F63 343 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 TIMM29Q9BSF4 260 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 DPH1Q9BZG8 443 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 SUDS3Q9H7L9 328 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 ARNT2Q9HBZ2 717 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 IL26Q9NPH9 171 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 TMPRSS11EQ9UL52 423 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 CAPN6Q9Y6Q1 641 aa15.86■□□□□ 0.13
CCDC88C-209ENST00000554872 PTPRQQ9UMZ3 2332 aa15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 HGSO14964 777 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-209ENST00000554872 PPM1DO15297 605 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms