RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 A0A1W2PPW3 197 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 C7orf72A4D263 438 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TMX2-CTNND1H3BSU7 103 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 J3QRK9 145 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 EIF3FO00303 357 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SLC9A3R1O14745 358 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 AIM2O14862 343 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 ADH5P11766 374 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TFE3P19532 575 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 IL1R2P27930 398 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 MIPP30301 263 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TTKP33981 857 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CDKN2BP42772 138 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RPS9P46781 194 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CTBSQ01459 385 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 OTUD4Q01804 1114 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 KLF10Q13118 480 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 ANGPT1Q15389 498 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SMTNL2Q2TAL5 461 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 ANO4Q32M45 955 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 IL23RQ5VWK5 629 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TSSK4Q6SA08 328 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 C1orf210Q8IVY1 113 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CPNE9Q8IYJ1 553 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 DEFB106AQ8N104 65 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 KIAA1958Q8N8K9 716 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 KYQ8NBH2 561 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 ACTL9Q8TC94 416 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 FBXL8Q96CD0 374 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CDK5RAP1Q96SZ6 601 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CDRT15Q96T59 188 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TDRD1Q9BXT4 1180 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 FRMD8P1Q9BZ68 369 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 C10orf88Q9H8K7 445 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 COQ10BQ9H8M1 238 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CXorf21Q9HAI6 301 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 FAM86C1Q9NVL1 165 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 DDX56Q9NY93 547 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 VPS28Q9UK41 221 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 USP18Q9UMW8 372 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RBMX2Q9Y388 322 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TTLL3Q9Y4R7 772 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SPO11Q9Y5K1 396 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TEX264Q9Y6I9 313 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 PTPRZ1P23471 2315 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TRIM64CA6NLI5 447 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM114B3SHH9 223 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 NCAM2O15394 837 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 NOL3O60936 208 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 RNASEH2AO75792 299 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 BCAS2O75934 225 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TRUB2O95900 331 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DCKP27707 260 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SCNN1AP37088 669 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MATKP42679 507 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DYNLT1P63172 113 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 BNIP3Q12983 259 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ITGADQ13349 1161 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TRIP4Q15650 581 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 KCNJ8Q15842 424 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ARL13BQ3SXY8 428 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 PIGGQ5H8A4 983 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 AARS2Q5JTZ9 985 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 VWA5B1Q5TIE3 1220 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MSANTD2Q6P1R3 559 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 FRA10AC1Q70Z53 315 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 LYSMD3Q7Z3D4 306 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ETFBKMTQ8IXQ9 262 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 KCTD6Q8NC69 237 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 OTUB2Q96DC9 234 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MSANTD3Q96H12 275 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DOK1Q99704 481 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 CTRCQ99895 268 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ANKRD60Q9BZ19 345 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 CHRDQ9H2X0 955 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 POPDC2Q9HBU9 364 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ZDHHC4Q9NPG8 344 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 OLA1Q9NTK5 396 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 PNPOQ9NVS9 261 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SPATA6Q9NWH7 488 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 LSM7Q9UK45 103 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 PTBP2Q9UKA9 531 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 CLEC4EQ9ULY5 219 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SLC30A1Q9Y6M5 507 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DCHS1Q96JQ0 3298 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 CXorf49A8MYA2 514 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 NEDD8-MDP1E9PL57 170 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 K7EQS6 105 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 PRPSAP2O60256 369 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SNAP91O60641 907 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ADH1CP00326 375 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 C1QAP02745 245 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SERPINE1P05121 402 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 KRT7P08729 469 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 FGF3P11487 239 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TYRP14679 529 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ME2P23368 584 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms