RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 EXT2Q93063 718 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 PDLIM5Q96HC4 596 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 NSUN5Q96P11 429 aaKnown RBP13.68□□□□□ -0.22
RTN3-210ENST00000540798 WDR41Q9HAD4 459 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 CFAP97Q9P2B7 532 aa13.68□□□□□ -0.22
RTN3-210ENST00000540798 A0A0U1RQS6 177 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 AZIN1O14977 448 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 THOP1P52888 689 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 LCP2Q13094 533 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 LRP8Q14114 963 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 C8orf82Q6P1X6 216 aaPredicted RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 FBXO39Q8N4B4 442 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 CCDC124Q96CT7 223 aaKnown RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 YME1L1Q96TA2 773 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 LMCD1Q9NZU5 365 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 KIAA1522Q9P206 1035 aaPredicted RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 PKP3Q9Y446 797 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 PLXNB3Q9ULL4 1909 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 A0A0J9YYE9 177 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 NPEPPSL1A6NEC2 478 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 PSMD12O00232 456 aaPredicted RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 MAP3K7O43318 606 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 TRBC1P01850 177 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 RPS3P23396 243 aaKnown RBP eCLIP13.67□□□□□ -0.221e-6■■■■□ 21.3
RTN3-210ENST00000540798 EEF1DP29692 281 aaKnown RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 CLCQ05315 142 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 CEACAM7Q14002 265 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 TXNDC11Q6PKC3 985 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 CERS6Q6ZMG9 384 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 DHDDSQ86SQ9 333 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 CAMK1DQ8IU85 385 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 PPFIBP2Q8ND30 876 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 DDI1Q8WTU0 396 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 PYDC1Q8WXC3 89 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 CDRT15Q96T59 188 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 C11orf49Q9H6J7 331 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 MID1IP1Q9NPA3 183 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 TRMT6Q9UJA5 497 aaKnown RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 INTS6Q9UL03 887 aaKnown RBP13.67□□□□□ -0.22
RTN3-210ENST00000540798 PCDHB1Q9Y5F3 818 aa13.67□□□□□ -0.22
RTN3-210ENST00000540798 TRAV19A0A0A6YYK7 116 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TRBV5-4A0A0C4DH59 114 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 SUPT3HB4E1H0 165 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 FBP2O00757 339 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 SUPT3HO75486 399 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 ALPIP09923 528 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 ALDOCP09972 364 aaKnown RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 GFAPP14136 432 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 HK3P52790 923 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 FOXA1P55317 472 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CDC16Q13042 620 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 FASTKQ14296 549 aaKnown RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 CCDC149Q6ZUS6 474 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 EEF1AKMT1Q8WVE0 214 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CLP1Q92989 425 aaKnown RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 ZNF184Q99676 751 aaPredicted RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 NPAS2Q99743 824 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TUBB1Q9H4B7 451 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 LRCH1Q9Y2L9 728 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 PCDHGA7Q9Y5G6 932 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 LRG1P02750 347 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CKMP06732 381 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 GPX3P22352 226 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CD70P32970 193 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 MRPL19P49406 292 aaKnown RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 IL2P60568 153 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 STX5Q13190 355 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 BLMHQ13867 455 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 PLEKHG6Q3KR16 790 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 ANO7Q6IWH7 933 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 HACD2Q6Y1H2 254 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TWIST2Q8WVJ9 160 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 FAM210AQ96ND0 272 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TTC1Q99614 292 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 GPR63Q9BZJ6 419 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TM6SF2Q9BZW4 377 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 AKTIPQ9H8T0 292 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CACNA2D2Q9NY47 1150 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 EVLQ9UI08 416 aaPredicted RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 PCTPQ9UKL6 214 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 DHRS7Q9Y394 339 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 A0A1B0GTL3 188 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 LEFTY2O00292 366 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 BTN3A1O00481 513 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CASQ2O14958 399 aaPredicted RBP13.66□□□□□ -0.22
RTN3-210ENST00000540798 CTPS1P17812 591 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 GJA8P48165 433 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 ERFP50548 548 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 ANKS6Q68DC2 871 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 KLHL23Q8NBE8 558 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 SLC26A7Q8TE54 656 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 TRPC4APQ8TEL6 797 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 LYSMD1Q96S90 227 aa13.66□□□□□ -0.22
RTN3-210ENST00000540798 CAPN8A6NHC0 703 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 PIP5K1BO14986 540 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 C8AP07357 584 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 PRR35P0CG20 571 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ACRP10323 421 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 BMP1P13497 986 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 BCL2L1Q07817 233 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms