RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 CCHCR1Q8TD31 782 aa11.88□□□□□ -0.51
CBX3P4-202ENST00000540428 HDAC11Q96DB2 347 aa11.88□□□□□ -0.51
CBX3P4-202ENST00000540428 NAP1L5Q96NT1 182 aaPredicted RBP11.88□□□□□ -0.51
CBX3P4-202ENST00000540428 KCNK6Q9Y257 313 aa11.88□□□□□ -0.51
CBX3P4-202ENST00000540428 TTLL3Q9Y4R7 772 aa11.88□□□□□ -0.51
CBX3P4-202ENST00000540428 MN1Q10571 1320 aaPredicted RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 LOC101059948A0A1B0GTJ6 334 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 FADS2P1A8MWK0 482 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 POLR1CO15160 346 aaPredicted RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 NKX2-8O15522 239 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 GRID2O43424 1007 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 DLGAP3O95886 979 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 SERPING1P05155 500 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 HLA-DQB2P05538 268 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 ACP5P13686 325 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 CASRP41180 1078 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 SSR1P43307 286 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 NOP2P46087 812 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 UBE2IP63279 158 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 SRSF1Q07955 248 aaKnown RBP eCLIP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 NIPAL4Q0D2K0 466 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 QPCTQ16769 361 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 COLEC12Q5KU26 742 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 TIPARPQ7Z3E1 657 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 PTRH1Q86Y79 214 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 PLXDC1Q8IUK5 500 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 MAP7D3Q8IWC1 876 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 ESX1Q8N693 406 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 KCTD6Q8NC69 237 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 C9orf43Q8TAL5 461 aaPredicted RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 APOBEC4Q8WW27 367 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 FAF2Q96CS3 445 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 IQCDQ96DY2 449 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 CTRCQ99895 268 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 MLPHQ9BV36 600 aaPredicted RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 ADGRE3Q9BY15 652 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 EPN3Q9H201 632 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 RAD18Q9NS91 495 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 SIDT1Q9NXL6 827 aaKnown RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 NFKBIL1Q9UBC1 381 aaPredicted RBP11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 CPNE7Q9UBL6 633 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 LCMT1Q9UIC8 334 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 PRKAB1Q9Y478 270 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 ADGRG1Q9Y653 693 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 MAST4O15021 2626 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 HECTD1Q9ULT8 2610 aa11.87□□□□□ -0.51
CBX3P4-202ENST00000540428 A0A087X0T9 212 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 TOX3O15405 576 aaPredicted RBP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 SNX2O60749 519 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 SERPINC1P01008 464 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 C9P02748 559 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 KRT7P08729 469 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 FAM228BP0C875 321 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 XRCC1P18887 633 aaPredicted RBP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 ANP32AP39687 249 aaKnown RBP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 STAT5AP42229 794 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 DCDC1P59894 354 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 ZBED6P86452 979 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 PDPK2PQ6A1A2 396 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 ALKBH5Q6P6C2 394 aaKnown RBP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 KDELC2Q7Z4H8 507 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 CCDC13Q8IYE1 715 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 STARD8Q92502 1023 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 PLEKHG4BQ96PX9 1271 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 TRIM39Q9HCM9 518 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 APMAPQ9HDC9 416 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 TMEM63CQ9P1W3 806 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 ATXN10Q9UBB4 475 aa11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 UBR5O95071 2799 aaPredicted RBP11.86□□□□□ -0.51
CBX3P4-202ENST00000540428 CHUKO15111 745 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 MTA2O94776 668 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 PROSCO94903 275 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 SLC25A14O95258 325 aaPredicted RBP11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 MMP2P08253 660 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ZNF8P17098 575 aaPredicted RBP11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 TCN2P20062 427 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 OAS2P29728 719 aaKnown RBP11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 CD86P42081 329 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 MAPK9P45984 424 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 IFI35P80217 286 aaPredicted RBP11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 FOXK1P85037 733 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 GBE1Q04446 702 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 SEPT6Q14141 434 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 SKIDA1Q1XH10 827 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ATP13A4Q4VNC1 1196 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ZNF569Q5MCW4 686 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 TMEM26Q6ZUK4 368 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 UNC5BQ8IZJ1 945 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 TRAM1L1Q8N609 369 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 PQLC3Q8N755 202 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 C9orf72Q96LT7 481 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ZNF830Q96NB3 372 aaPredicted RBP11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ZSCAN5AQ9BUG6 496 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 TBC1D10AQ9BXI6 508 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 ZFYVE1Q9HBF4 777 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 PRDM8Q9NQV8 689 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 KLC4Q9NSK0 619 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 DTLQ9NZJ0 730 aa11.85□□□□□ -0.51
CBX3P4-202ENST00000540428 UVRAGQ9P2Y5 699 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms