RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 B4GAT1O43505 415 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 NUAK1O60285 661 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 ANXA9O76027 345 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 DXOO77932 396 aaKnown RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 SLC25A14O95258 325 aaPredicted RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 EML2O95834 649 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 ZNF8P17098 575 aaPredicted RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 ADRA1AP35348 466 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 OLIG2Q13516 323 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 PEX6Q13608 980 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 LRP8Q14114 963 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 TBC1D25Q3MII6 688 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 C3orf38Q5JPI3 329 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 C19orf48Q6RUI8 117 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 CHST15Q7LFX5 561 aaPredicted RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 GLT6D1Q7Z4J2 308 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 ZNF438Q7Z4V0 828 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 ADGRG6Q86SQ4 1221 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 TTC13Q8NBP0 860 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 SNIP1Q8TAD8 396 aaKnown RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 BLOC1S5Q8TDH9 187 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 PRR11Q96HE9 360 aaPredicted RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 SPATA13Q96N96 652 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 PLEKHG4BQ96PX9 1271 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 OR2AG1Q9H205 316 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 TRIM39Q9HCM9 518 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 HACD3Q9P035 362 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 IL17CQ9P0M4 197 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 ATXN7L1Q9ULK2 861 aaPredicted RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 R3HDM2Q9Y2K5 976 aaKnown RBP14.64□□□□□ -0.07
USP28-204ENST00000537642 A0A087WV48 116 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 GOLGA6L9A6NEM1 432 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 RHPN2P1A8MT19 583 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 GRID2O43424 1007 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 BUD23O43709 281 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 KRT86O43790 486 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 STK10O94804 968 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 PTMAP06454 111 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 ACP5P13686 325 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 ACTN2P35609 894 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 EIF2S3P41091 472 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 OR1D5P58170 312 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 NR1D2Q14995 579 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 ATP13A5Q4VNC0 1218 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 KHDC1Q4VXA5 237 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 RANBP10Q6VN20 620 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 TMPRSS9Q7Z410 1059 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 PHYKPLQ8IUZ5 450 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 CCDC112Q8NEF3 446 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 HNRNPLLQ8WVV9 542 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 FGF11Q92914 225 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 DCBLD2Q96PD2 775 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 VPS35Q96QK1 796 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 APOL2Q9BQE5 337 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 FOXP3Q9BZS1 431 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 IL26Q9NPH9 171 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 ASCL3Q9NQ33 180 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 KCNK6Q9Y257 313 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 AAR2Q9Y312 384 aaKnown RBP14.63□□□□□ -0.07
USP28-204ENST00000537642 CHD6Q8TD26 2715 aa14.63□□□□□ -0.07
USP28-204ENST00000537642 TRBV23OR9-2A0A075B6M9 112 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 CCDC187A0A096LP49 1063 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 C5orf60A6NFR6 353 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 CHUKO15111 745 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 PPM1DO15297 605 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 MTX2O75431 263 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 ZNF189O75820 626 aaPredicted RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 SPAM1P38567 509 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 INHBCP55103 352 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 PRPSAP1Q14558 356 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 PTPRCAPQ14761 206 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 IGF2-ASQ6U949 168 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 LRRC8AQ8IWT6 810 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 KLHDC8BQ8IXV7 354 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 LSMEM2Q8N112 164 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 WDR36Q8NI36 951 aaKnown RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 SLC35B2Q8TB61 432 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 SLC37A2Q8TED4 501 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 LIN37Q96GY3 246 aaPredicted RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 ZNF578Q96N58 590 aaPredicted RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 ZNF106Q9H2Y7 1883 aaKnown RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 TBC1D29Q9UFV1 150 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 RALYQ9UKM9 306 aaKnown RBP14.62□□□□□ -0.07
USP28-204ENST00000537642 PCDHGA8Q9Y5G5 932 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 FAM208BQ5VWN6 2430 aa14.62□□□□□ -0.07
USP28-204ENST00000537642 A6NCN8 305 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 GPR89AB7ZAQ6 455 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 GAPDHSO14556 408 aaPredicted RBP14.61□□□□□ -0.07
USP28-204ENST00000537642 GPR39O43194 453 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 GPR89BP0CG08 455 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 ALDH4A1P30038 563 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 CCKBRP32239 447 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 CA5AP35218 305 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 GPR3P46089 330 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 GDF10P55107 478 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 CCZ1BP86790 482 aa14.61□□□□□ -0.07
USP28-204ENST00000537642 CCZ1P86791 482 aaPredicted RBP14.61□□□□□ -0.07
USP28-204ENST00000537642 ZFP36L1Q07352 338 aaKnown RBP14.61□□□□□ -0.07
USP28-204ENST00000537642 MSLNQ13421 630 aaPredicted RBP14.61□□□□□ -0.07
USP28-204ENST00000537642 BIRC2Q13490 618 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms