RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 HMBOX1Q6NT76 420 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 PSAPL1Q6NUJ1 521 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 PRMT9Q6P2P2 845 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 NKAPQ8N5F7 415 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 EFHBQ8N7U6 833 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 C2orf15Q8WU43 125 aaKnown RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 CANT1Q8WVQ1 401 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 ZNF597Q96LX8 424 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 SLC30A3Q99726 388 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 TTPALQ9BTX7 342 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 GRIP2Q9C0E4 1043 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 BPIFA1Q9NP55 256 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 STARD7Q9NQZ5 370 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 SDR39U1Q9NRG7 319 aaPredicted RBP13.07□□□□□ -0.32
LDLR-203ENST00000535915 FKBPLQ9UIM3 349 aa13.07□□□□□ -0.32
LDLR-203ENST00000535915 CROCCQ5TZA2 2017 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 H0YJX3 145 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 OR1I1O60431 355 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 TSPAN3O60637 253 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 NIPSNAP2O75323 286 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 VPS4BO75351 444 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 VPS26AO75436 327 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 MATN4O95460 622 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 CHRM3P20309 590 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 DIO3P55073 304 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 ELAVL2Q12926 359 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 ZRANB3Q5FWF4 1079 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 PIANPQ8IYJ0 282 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 MINDY1Q8N5J2 469 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 SIDT2Q8NBJ9 832 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 NMD3Q96D46 503 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 SLC45A3Q96JT2 553 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 ZFRQ96KR1 1074 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 BIRC8Q96P09 236 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 CYP2S1Q96SQ9 504 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 TTLL2Q9BWV7 592 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 EPB41L1Q9H4G0 881 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 ELAC1Q9H777 363 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 GID8Q9NWU2 228 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 PLK2Q9NYY3 685 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 ABCD2Q9UBJ2 740 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 EGFL7Q9UHF1 273 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 TRMT6Q9UJA5 497 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 AURKCQ9UQB9 309 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 RAI2Q9Y5P3 530 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 OAS3Q9Y6K5 1087 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 A0A1W2PQ45 241 aaPredicted RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 A0A1W2PQY0 241 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 PFDN6O15212 129 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 RPS17P08708 135 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 PKMP14618 531 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 PRDX3P30048 256 aaKnown RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 TTPAP49638 278 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 CYTH1Q15438 398 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 RBBP7Q16576 425 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 NADK2Q4G0N4 442 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 C16orf59Q7L2K0 433 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 SLC15A3Q8IY34 581 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 MYO1HQ8N1T3 1032 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 FBXO22Q8NEZ5 403 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 LRRC58Q96CX6 371 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 UHRF1Q96T88 793 aaPredicted RBP13.06□□□□□ -0.32
LDLR-203ENST00000535915 SLC29A1Q99808 456 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 OSBPL11Q9BXB4 747 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 SLC2A11Q9BYW1 496 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 MUC3BQ9H195 1237 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 GKN1Q9NS71 199 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 VPS9D1Q9Y2B5 631 aa13.06□□□□□ -0.32
LDLR-203ENST00000535915 ILVBLA1L0T0 632 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 CCDC160A6NGH7 325 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 ANKRD66B4E2M5 251 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 ADAM12O43184 909 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 COCHO43405 550 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 NBNO60934 754 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 CHEK2O96017 543 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 KLKB1P03952 638 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 IRF1P10914 325 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 SELPP16109 830 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 CORO1AP31146 461 aaKnown RBP13.05□□□□□ -0.32
LDLR-203ENST00000535915 CLCN2P51788 898 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 PTPRRQ15256 657 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 HECTD3Q5T447 861 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 RBM44Q6ZP01 1051 aaKnown RBP13.05□□□□□ -0.32
LDLR-203ENST00000535915 SPPL2CQ8IUH8 684 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 CHERPQ8IWX8 916 aaKnown RBP13.05□□□□□ -0.32
LDLR-203ENST00000535915 METTL25Q8N6Q8 603 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 FAM110BQ8TC76 370 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.05□□□□□ -0.322e-6■■■■□ 26.2
LDLR-203ENST00000535915 ZUFSPQ96AP4 578 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 ESAMQ96AP7 390 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 DGCR14Q96DF8 476 aaKnown RBP13.05□□□□□ -0.32
LDLR-203ENST00000535915 HGH1Q9BTY7 390 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 ADGRE3Q9BY15 652 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 TRIM15Q9C019 465 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 RETREG1Q9H6L5 497 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 SARS2Q9NP81 518 aaKnown RBP13.05□□□□□ -0.32
LDLR-203ENST00000535915 FXYD1O00168 92 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 STX16O14662 325 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 GIPC1O14908 333 aa13.05□□□□□ -0.32
LDLR-203ENST00000535915 STX7O15400 261 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms