RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 CNTN6Q9UQ52 1028 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 FAM32AQ9Y421 112 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 GPR45Q9Y5Y3 372 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 LRRC37A2A6NM11 1700 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 PRSS51A0A1B0GVH4 220 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 GOLGA8IPA6NC78 632 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 FAM159BA6NKW6 160 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TRPC5OSA6NMA1 111 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 GOLGA8JA6NMD2 632 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 HNRNPDLO14979 420 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 LSM1O15116 133 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 SLC16A4O15374 487 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MAFO75444 373 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 KNG1P01042 644 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 HLA-DRAP01903 254 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 ADRB2P07550 413 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 FCGR1AP12314 374 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MLNP12872 115 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TPSB2P20231 275 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 JAK1P23458 1154 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MAGEA6P43360 314 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TM4SF4P48230 202 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 EIF2B2P49770 351 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 RARRES1P49788 294 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 LIG4P49917 911 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TMBIM6P55061 237 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 PEX3P56589 373 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 DYNLT1P63172 113 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MRPS22P82650 360 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 HTRA3P83110 453 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 SRSF2Q01130 221 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 PLOD1Q02809 727 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 PIN1Q13526 163 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 TUBA3CQ13748 450 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 KCNJ11Q14654 390 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 PDK2Q15119 407 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TPSAB1Q15661 275 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TAZQ16635 292 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 CLPPQ16740 277 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 SPATS1Q496A3 300 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 PITRM1Q5JRX3 1037 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 C6orf52Q5T4I8 152 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 FAM102BQ5T8I3 360 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 KANK2Q63ZY3 851 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 XRRA1Q6P2D8 792 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TMEM270Q6UE05 265 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 EPGNQ6UW88 154 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 DCDC5Q6ZRR9 648 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 AMIGO2Q86SJ2 522 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 CAMK1DQ8IU85 385 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TICAM1Q8IUC6 712 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 CHERPQ8IWX8 916 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 C4orf19Q8IY42 314 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 HACE1Q8IYU2 909 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 GALNT4Q8N4A0 578 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TTC30BQ8N4P2 665 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 CPSF7Q8N684 471 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 POU5F2Q8N7G0 328 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 FAM71DQ8N9W8 422 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 GPRC5AQ8NFJ5 357 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 DNERQ8NFT8 737 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 SPATA18Q8TC71 538 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 ADAMTS16Q8TE57 1224 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 ISOC1Q96CN7 298 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 ASB9Q96DX5 294 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MCEEQ96PE7 176 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 UIMC1Q96RL1 719 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TSPAN18Q96SJ8 248 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 EBNA1BP2Q99848 306 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 MXRA8Q9BRK3 442 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 NTPCRQ9BSD7 190 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 ACE2Q9BYF1 805 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 ANKRD60Q9BZ19 345 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 WDR12Q9GZL7 423 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 ILKAPQ9H0C8 392 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 CDH19Q9H159 772 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TRPV6Q9H1D0 765 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 COPS7BQ9H9Q2 264 aaPredicted RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 RAVER2Q9HCJ3 691 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 TRPC7Q9HCX4 862 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 HMG20AQ9NP66 347 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TCF7L2Q9NQB0 619 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 DPP7Q9UHL4 492 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TTLL3Q9Y4R7 772 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 TRIM17Q9Y577 477 aa6.6□□□□□ -1.35
USP28-202ENST00000535607 MYH9P35579 1960 aaKnown RBP6.6□□□□□ -1.35
USP28-202ENST00000535607 LOC100653049A0A140TA62 436 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 FAM170AA1A519 330 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 BCLAF3A2AJT9 711 aaKnown RBP6.59□□□□□ -1.35
USP28-202ENST00000535607 C16orf96A6NNT2 1141 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 ZNF487B1APH4 448 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 E5RJQ4 531 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 AP3B1O00203 1094 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 AIM2O14862 343 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 XPO1O14980 1071 aaKnown RBP6.59□□□□□ -1.35
USP28-202ENST00000535607 PFDN6O15212 129 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 DCXO43602 365 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 PLIN3O60664 434 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 CNMDO75829 334 aa6.59□□□□□ -1.35
USP28-202ENST00000535607 KRT34O76011 436 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms