RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-205	ENST00000535375	POLG2	Q9UHN1	485 aa		4.92	□□□□□ -1.62
PRKDC-205	ENST00000535375	PADI3	Q9ULW8	664 aa		4.92	□□□□□ -1.62
PRKDC-205	ENST00000535375	TCF19	Q9Y242	345 aa		4.92	□□□□□ -1.62
PRKDC-205	ENST00000535375	DLGAP4	Q9Y2H0	992 aa		4.92	□□□□□ -1.62
PRKDC-205	ENST00000535375	FAM237B	A0A1B0GVD1	139 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	EIF4E1B	A6NMX2	242 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	ANKRD28	O15084	1053 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	KCNN4	O15554	427 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	NDUFS3	O75489	264 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	NFKBIA	P25963	317 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	UBA7	P41226	1012 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	APOBEC1	P41238	236 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	PIK3CA	P42336	1068 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	MMP14	P50281	582 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	COG7	P83436	770 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	STXBP5	Q5T5C0	1151 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	CCDC70	Q6NSX1	233 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	PLEKHM3	Q6ZWE6	761 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	NRROS	Q86YC3	692 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	CIART	Q8N365	385 aa	Predicted RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	SLC24A4	Q8NFF2	622 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	UTP15	Q8TED0	518 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	TMEM255B	Q8WV15	326 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	UPF2	Q9HAU5	1272 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	RRP7BP	Q9NSQ0	103 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	TCP11L1	Q9NUJ3	509 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	R3HDM2	Q9Y2K5	976 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	ADAM18	Q9Y3Q7	739 aa		4.91	□□□□□ -1.62
PRKDC-205	ENST00000535375	KANSL1L	A0AUZ9	987 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	FAM90A26	D6RGX4	464 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	TMEM63A	O94886	807 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	CLEC3B	P05452	202 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	CD53	P19397	219 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	UGT1A1	P22309	533 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	CLDN20	P56880	219 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	TFAP4	Q01664	338 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	CEBPZ	Q03701	1054 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	LRMP	Q12912	555 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	GAGE5	Q13069	117 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	GAGE6	Q13070	117 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	ADIPOQ	Q15848	244 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	SIRPB2	Q5JXA9	342 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	PLA2G4F	Q68DD2	849 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	PAPD4	Q6PIY7	484 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	CYP20A1	Q6UW02	462 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	OR1J2	Q8NGS2	313 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	LINGO1	Q96FE5	620 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	POLR1B	Q9H9Y6	1135 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	DIAPH3	Q9NSV4	1193 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	COPG2	Q9UBF2	871 aa		4.9	□□□□□ -1.63
PRKDC-205	ENST00000535375	ATP2A1	O14983	1001 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	CAVIN2	O95810	425 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	ZNF23	P17027	643 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	NR2F2	P24468	414 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	RGS2	P41220	211 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	MRPS34	P82930	218 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	ZSCAN23	Q3MJ62	389 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	ZNF805	Q5CZA5	627 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	MARK2	Q7KZI7	788 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	ARHGAP12	Q8IWW6	846 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	PDILT	Q8N807	584 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	RDM1	Q8NG50	284 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	OR52I2	Q8NH67	350 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	GRAPL	Q8TC17	118 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	HM13	Q8TCT9	377 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	C7orf26	Q96N11	449 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	PGLYRP2	Q96PD5	576 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	DUX3	Q96PT4	197 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	SEPT5	Q99719	369 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	SEMA3C	Q99985	751 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	SMC4	Q9NTJ3	1288 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	TAF1	P21675	1872 aa		4.89	□□□□□ -1.63
PRKDC-205	ENST00000535375	IGLV5-45	A0A087WSX0	123 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	ZCWPW2	A0A1B0GU75	182 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375		H3BQ06	376 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	EIF3D	O15371	548 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	HCRTR2	O43614	444 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	SYNGR3	O43761	229 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	GAS8-AS1	O95177	125 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	EIF2S1	P05198	315 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	PSMA4	P25789	261 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	CDKN1A	P38936	164 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	MLLT10	P55197	1068 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	NIPAL4	Q0D2K0	466 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	MED22	Q15528	200 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	KRTAP27-1	Q3LI81	207 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	CCNYL2	Q5T2Q4	361 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	ZNF449	Q6P9G9	518 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	RAD9B	Q6WBX8	426 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	SEPT14	Q6ZU15	432 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	TMTC3	Q6ZXV5	915 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	RNF168	Q8IYW5	571 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	PAF1	Q8N7H5	531 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	OR8K5	Q8NH50	307 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	TDRD7	Q8NHU6	1098 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	PPP4R1	Q8TF05	950 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	UCMA	Q8WVF2	138 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	SLC44A1	Q8WWI5	657 aa		4.88	□□□□□ -1.63
PRKDC-205	ENST00000535375	ARHGEF2	Q92974	986 aa	Known RBP	4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms