RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MOSPD1Q9UJG1 213 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 PADI4Q9UM07 663 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 PKP3Q9Y446 797 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TDRD6O60522 2096 aaKnown RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 GLYATL1P3A0A0U1RQE8 302 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 MROH6A6NGR9 719 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 STX7O15400 261 aaKnown RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 OPA1O60313 960 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A9O60656 530 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 CRTAMO95727 393 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 CAPNS1P04632 268 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 ZNF8P17098 575 aaPredicted RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 TPH1P17752 444 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A6P19224 532 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A1P22309 533 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A4P22310 534 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 AK4P27144 223 aaPredicted RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A3P35503 534 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A5P35504 534 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 GRIA1P42261 906 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 RPIAP49247 311 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 CLDN6P56747 220 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 PDE1BQ01064 536 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 ILF3Q12906 894 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS28-216ENST00000533806 HLTFQ14527 1009 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS28-216ENST00000533806 CHRNA6Q15825 494 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 PERM1Q5SV97 790 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 PAPD7Q5XG87 772 aaKnown RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 C4orf22Q6V702 233 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 MARK2Q7KZI7 788 aaKnown RBP12.84□□□□□ -0.35
VPS28-216ENST00000533806 LINC00523Q86TU6 105 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 PHYKPLQ8IUZ5 450 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 ZNF547Q8IVP9 402 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 GALNT15Q8N3T1 639 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 FAM46DQ8NEK8 389 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 OR13C4Q8NGS5 318 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 IFI44Q8TCB0 444 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 GLMNQ92990 594 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 GSDMCQ9BYG8 508 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 OR2AG1Q9H205 316 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A7Q9HAW7 530 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A10Q9HAW8 530 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 UGT1A8Q9HAW9 530 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 ARFGAP3Q9NP61 516 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 RAB6BQ9NRW1 208 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 SMARCAL1Q9NZC9 954 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 TAAR2Q9P1P5 351 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 NEU2Q9Y3R4 380 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 PRKAB1Q9Y478 270 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 ZZEF1O43149 2961 aa12.84□□□□□ -0.35
VPS28-216ENST00000533806 EPG5Q9HCE0 2579 aa12.83□□□□□ -0.35
VPS28-216ENST00000533806 GOLGA4Q13439 2230 aaKnown RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 DMXL2Q8TDJ6 3036 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 A6NCN8 305 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 H7C0S8 307 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 PGRMC1O00264 195 aaKnown RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 ZNF185O15231 689 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 GPR39O43194 453 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 VEGFDO43915 354 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 ASMTLO95671 621 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 MSNP26038 577 aaKnown RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 CLCNKAP51800 687 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 TMEM115Q12893 351 aaPredicted RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 PEX6Q13608 980 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 CCDC157Q569K6 752 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 FAM151BQ6UXP7 276 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 EFL1Q7Z2Z2 1120 aaKnown RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 C11orf96Q7Z7L8 435 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 MARCH9Q86YJ5 346 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 GALNT13Q8IUC8 556 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 DCBLD1Q8N8Z6 715 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 CCDC89Q8N998 374 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 DDHD1Q8NEL9 900 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 OR52K1Q8NGK4 314 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 ZNF398Q8TD17 642 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 NAT6Q93015 286 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 LRRC45Q96CN5 670 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 AP1M1Q9BXS5 423 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 CASS4Q9NQ75 786 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 EIF2B3Q9NR50 452 aaKnown RBP12.83□□□□□ -0.36
VPS28-216ENST00000533806 EVA1BQ9NVM1 165 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 SIRPGQ9P1W8 387 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 GULP1Q9UBP9 304 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 SLC23A2Q9UGH3 650 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 ZNHIT2Q9UHR6 403 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 RABGEF1Q9UJ41 708 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 APPL1Q9UKG1 709 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 DOLKQ9UPQ8 538 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 GPSM3Q9Y4H4 160 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS28-216ENST00000533806 SCN8AQ9UQD0 1980 aa12.83□□□□□ -0.36
VPS28-216ENST00000533806 IGF2RP11717 2491 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 CPED1A4D0V7 1026 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 CASC3O15234 703 aaKnown RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 GRID2O43424 1007 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 MTX2O75431 263 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 SRP72O76094 671 aaKnown RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 EML2O95834 649 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 PNLIPP16233 465 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms