RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TRBV5-4A0A0C4DH59 114 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 H0Y858 1186 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 PSMD11O00231 422 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 NDUFAB1O14561 156 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 GALR2O43603 387 aaPredicted RBP21.05■□□□□ 0.96
VPS28-212ENST00000530836 TAC1P20366 129 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 SPINT3P49223 89 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 ITGA9Q13797 1035 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 FAM151BQ6UXP7 276 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 TMEM92Q6UXU6 159 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 PIANPQ8IYJ0 282 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 MAML2Q8IZL2 1156 aaPredicted RBP21.05■□□□□ 0.96
VPS28-212ENST00000530836 CCDC63Q8NA47 563 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 NDNQ99608 321 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 ASB8Q9H765 288 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 NFKBIL1Q9UBC1 381 aaPredicted RBP21.05■□□□□ 0.96
VPS28-212ENST00000530836 PCDHB1Q9Y5F3 818 aa21.05■□□□□ 0.96
VPS28-212ENST00000530836 A0A0U1RQS6 177 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 A0A1W2PQF6 199 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 UBA6A0AVT1 1052 aaPredicted RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 AGAP14A8MT82 685 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 KLF11O14901 512 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 PHGDHO43175 533 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 KLHL2O95198 593 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ESR1P03372 595 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 PROCP04070 461 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 NEFHP12036 1026 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 HOXB2P14652 356 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ZNF7P17097 686 aaPredicted RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 FDXRP22570 491 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 DGKEP52429 567 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 DCDC1P59894 354 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 FAM83EQ2M2I3 478 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 FBXL19Q6PCT2 694 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 PARS2Q7L3T8 475 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 RDH11Q8TC12 318 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ZNF398Q8TD17 642 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ZNF75CPQ92670 426 aaPredicted RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 RAB7BQ96AH8 199 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ULK4Q96C45 1275 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 C12orf65Q9H3J6 166 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 MANSC1Q9H8J5 431 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 NMRAL1Q9HBL8 299 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 GPAMQ9HCL2 828 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 PRSS16Q9NQE7 514 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 TAS2R13Q9NYV9 303 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 TMEM216Q9P0N5 145 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 EMCNQ9ULC0 261 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 FNDC3AQ9Y2H6 1198 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 ATG2BQ96BY7 2078 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 A8MX80 341 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 GAPDHSO14556 408 aaPredicted RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 RNASEH1O60930 286 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 IL1BP01584 269 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 PYGLP06737 847 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 C1SP09871 688 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 MMP12P39900 470 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 AGAP9Q5VTM2 703 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 KLC3Q6P597 504 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 ZNF549Q6P9A3 640 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 RBFAQ8N0V3 343 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 GPR26Q8NDV2 337 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 SREK1Q8WXA9 508 aaKnown RBP21.04■□□□□ 0.96
VPS28-212ENST00000530836 GRAMD1AQ96CP6 724 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 OLFM1Q99784 485 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 FBRSQ9HAH7 460 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 SYTL2Q9HCH5 934 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 SIRPGQ9P1W8 387 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 CRLS1Q9UJA2 301 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 FBXO4Q9UKT5 387 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 SARDHQ9UL12 918 aa21.04■□□□□ 0.96
VPS28-212ENST00000530836 H3BMM5 538 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 K7ESF4 209 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 PRMT5O14744 637 aaPredicted RBP21.03■□□□□ 0.96
VPS28-212ENST00000530836 BPGMP07738 259 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 PRSS56P0CW18 603 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 PKMP14618 531 aaKnown RBP21.03■□□□□ 0.96
VPS28-212ENST00000530836 DRD4P21917 467 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 RPS3P23396 243 aaKnown RBP eCLIP21.03■□□□□ 0.965e-7■■□□□ 13
VPS28-212ENST00000530836 IRF9Q00978 393 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 CCDC15Q0P6D6 951 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 CAMK2GQ13555 558 aaPredicted RBP21.03■□□□□ 0.96
VPS28-212ENST00000530836 ATG16L1Q676U5 607 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 KIAA1211LQ6NV74 962 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 NUDCD3Q8IVD9 361 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 LRRC34Q8IZ02 419 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 PLD6Q8N2A8 252 aaKnown RBP21.03■□□□□ 0.96
VPS28-212ENST00000530836 CAMKK1Q8N5S9 505 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 UBXN10Q96LJ8 280 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 HDAC8Q9BY41 377 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 FAM96AQ9H5X1 160 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 CD248Q9HCU0 757 aa21.03■□□□□ 0.96
VPS28-212ENST00000530836 ZNF106Q9H2Y7 1883 aaKnown RBP21.03■□□□□ 0.96
VPS28-212ENST00000530836 SYNCRIPO60506 623 aaKnown RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 COL9A1P20849 921 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 ACRV1P26436 265 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 HOXA6P31267 233 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 FMO4P31512 558 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 SKIV2L2P42285 1042 aaKnown RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 CDKN1CP49918 316 aaPredicted RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms